Reconstructing ancient genomes and epigenomes

L Orlando, MTP Gilbert, E Willerslev - Nature Reviews Genetics, 2015 - nature.com
Research involving ancient DNA (aDNA) has experienced a true technological revolution in
recent years through advances in the recovery of aDNA and, particularly, through …

Conservation archaeogenomics: ancient DNA and biodiversity in the Anthropocene

CA Hofman, TC Rick, RC Fleischer… - Trends in ecology & …, 2015 - cell.com
There is growing consensus that we have entered the Anthropocene, a geologic epoch
characterized by human domination of the ecosystems of the Earth. With the future …

The origins and adaptation of European potatoes reconstructed from historical genomes

RM Gutaker, CL Weiß, D Ellis, NL Anglin… - Nature ecology & …, 2019 - nature.com
Potato, one of the most important staple crops, originates from the highlands of the
equatorial Andes. There, potatoes propagate vegetatively via tubers under short days …

Shifts in plant functional strategies over the course of wheat domestication

A Roucou, C Violle, F Fort, P Roumet… - Journal of Applied …, 2018 - Wiley Online Library
Human selection, changes in environmental conditions and management practices drove
the phenotypic trajectory of crops during domestication. The characterization of the crop …

A comparison of niche construction theory and diet breadth models as explanatory frameworks for the initial domestication of plants and animals

BD Smith - Journal of Archaeological Research, 2015 - Springer
The initial domestication of plants and animals and the subsequent emergence of
agricultural economies in different world regions represent a major evolutionary transition in …

Ancient DNA: the first three decades

E Hagelberg, M Hofreiter… - … Transactions of the …, 2015 - royalsocietypublishing.org
Ancient DNA: the first three decades | Philosophical Transactions of the Royal Society B:
Biological Sciences logo logo Skip main navigationJournal menuClose Drawer MenuOpen …

[HTML][HTML] Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA

C Pont, S Wagner, A Kremer, L Orlando, C Plomion… - Genome Biology, 2019 - Springer
How contemporary plant genomes originated and evolved is a fascinating question. One
approach uses reference genomes from extant species to reconstruct the sequence and …

Uncovering the dispersion history, adaptive evolution and selection of wheat in China

Y Zhou, Z Chen, M Cheng, J Chen… - Plant Biotechnology …, 2018 - Wiley Online Library
Wheat was introduced to China approximately 4500 years ago, where it adapted over a
span of time to various environments in agro‐ecological growing zones. We investigated …

Reinforcing plant evolutionary genomics using ancient DNA

RM Gutaker, HA Burbano - Current opinion in plant biology, 2017 - Elsevier
Highlights•DNA from plant historic samples can be sequenced using next-generation
sequencing.•Library-based methods are superior to PCR for sequencing of ancient …

[HTML][HTML] Novel substrates as sources of ancient DNA: prospects and hurdles

EJ Green, CF Speller - Genes, 2017 - mdpi.com
Following the discovery in the late 1980s that hard tissues such as bones and teeth preserve
genetic information, the field of ancient DNA analysis has typically concentrated upon these …