Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition

UH Guzman, A Martinez-Val, Z Ye, E Damoc… - Nature …, 2024 - nature.com
Mass spectrometry (MS)-based proteomics aims to characterize comprehensive proteomes
in a fast and reproducible manner. Here we present the narrow-window data-independent …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Acquisition and analysis of DIA-based proteomic data: A comprehensive survey in 2023

R Lou, W Shui - Molecular & Cellular Proteomics, 2024 - ASBMB
Data-independent acquisition (DIA) mass spectrometry (MS) has emerged as a powerful
technology for high-throughput, accurate, and reproducible quantitative proteomics. This …

Parallelized acquisition of orbitrap and astral analyzers enables high-throughput quantitative analysis

HI Stewart, D Grinfeld, A Giannakopulos… - Analytical …, 2023 - ACS Publications
The growing trend toward high-throughput proteomics demands rapid liquid
chromatography–mass spectrometry (LC–MS) cycles that limit the available time to gather …

One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes

Z Ye, P Sabatier, J Martin-Gonzalez, A Eguchi… - nature …, 2024 - nature.com
Mass spectrometry (MS)-based proteomics workflows typically involve complex, multi-step
processes, presenting challenges with sample losses, reproducibility, requiring substantial …

The astounding exhaustiveness and speed of the Astral mass analyzer for highly complex samples is a quantum leap in the functional analysis of microbiomes

T Dumas, R Martinez Pinna, C Lozano, S Radau… - Microbiome, 2024 - Springer
Background By analyzing the proteins which are the workhorses of biological systems,
metaproteomics allows us to list the taxa present in any microbiota, monitor their relative …

The one hour human proteome

LR Serrano, TM Peters-Clarke, TN Arrey… - Molecular & Cellular …, 2024 - ASBMB
We describe deep analysis of the human proteome in less than 1 h. We achieve this
expedited proteome characterization by leveraging state-of-the-art sample preparation …

What's new in single-cell proteomics

T Truong, RT Kelly - Current Opinion in Biotechnology, 2024 - Elsevier
Highlights•Recent advances in single-cell proteomics.•Improvements in sample preparation,
separation techniques, mass spectrometry instrumentation, and data acquisition/analysis.• …

Proteomics of the Heart

OA Karpov, A Stotland, K Raedschelders… - Physiological …, 2024 - journals.physiology.org
Mass spectrometry-based proteomics is a sophisticated identification tool specializing in
portraying protein dynamics at a molecular level. Proteomics provides biologists with a …

Alzheimer's disease biomarker analysis using targeted mass spectrometry

J Gobom, A Brinkmalm, G Brinkmalm… - Molecular & Cellular …, 2024 - ASBMB
Alzheimer's disease (AD) is characterized by several neuropathological changes, mainly
extracellular amyloid aggregates (plaques), intraneuronal inclusions of phosphorylated tau …