Multifaceted computational modeling in glycoscience

S Perez, O Makshakova - Chemical Reviews, 2022 - ACS Publications
Glycoscience assembles all the scientific disciplines involved in studying various molecules
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …

Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations

FV Toukach, VP Ananikov - Chemical Society Reviews, 2013 - pubs.rsc.org
All living systems are comprised of four fundamental classes of macromolecules–nucleic
acids, proteins, lipids, and carbohydrates (glycans). Glycans play a unique role of joining …

Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts

PV Toukach, KS Egorova - Nucleic acids research, 2016 - academic.oup.com
Abstract The Carbohydrate Structure Databases (CSDBs, http://csdb. glycoscience. ru) store
structural, bibliographic, taxonomic, NMR spectroscopic, and other data on natural …

Uncovering the Molecular Composition and Architecture of the Bacillus subtilis Biofilm via Solid-State NMR Spectroscopy

Y Xue, C Yu, H Ouyang, J Huang… - Journal of the American …, 2024 - ACS Publications
The complex and dynamic compositions of biofilms, along with their sophisticated structural
assembly mechanisms, endow them with exceptional capabilities to thrive in diverse …

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2009–2010

DJ Harvey - Mass spectrometry reviews, 2015 - Wiley Online Library
This review is the sixth update of the original article published in 1999 on the application of
MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings …

GlyTouCan 1.0–The international glycan structure repository

K Aoki-Kinoshita, S Agravat, NP Aoki… - Nucleic acids …, 2016 - academic.oup.com
Glycans are known as the third major class of biopolymers, next to DNA and proteins. They
cover the surfaces of many cells, serving as the 'face'of cells, whereby other biomolecules …

[HTML][HTML] Molecular Characterization and Biocompatibility of Exopolysaccharide Produced by Moderately Halophilic Bacterium Virgibacillus dokdonensis from the …

M Andrew, G Jayaraman - Polymers, 2022 - mdpi.com
The use of natural polysaccharides as biomaterials is gaining importance in tissue
engineering due to their inherent biocompatibility. In this direction, the present study aims to …

[HTML][HTML] Three-dimensional structures of carbohydrates and where to find them

SI Scherbinina, PV Toukach - International journal of molecular sciences, 2020 - mdpi.com
Analysis and systematization of accumulated data on carbohydrate structural diversity is a
subject of great interest for structural glycobiology. Despite being a challenging task …

GlycoRDF: an ontology to standardize glycomics data in RDF

R Ranzinger, KF Aoki-Kinoshita, MP Campbell… - …, 2015 - academic.oup.com
Motivation: Over the last decades several glycomics-based bioinformatics resources and
databases have been created and released to the public. Unfortunately, there is no common …

Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99)

OG Ovchinnikova, E Mallette… - Proceedings of the …, 2016 - National Acad Sciences
Kdo (3-deoxy-d-manno-oct-2-ulosonic acid) is an eight-carbon sugar mostly confined to
Gram-negative bacteria. It is often involved in attaching surface polysaccharides to their lipid …