Splicing regulation in brain and testis: common themes for highly specialized organs

C Naro, E Cesari, C Sette - Cell Cycle, 2021 - Taylor & Francis
Expansion of the coding and regulatory capabilities of eukaryotic transcriptomes by
alternative splicing represents one of the evolutionary forces underlying the increased …

Computing the role of alternative splicing in cancer

Z Liu, R Rabadan - Trends in cancer, 2021 - cell.com
Most human genes undergo alternative splicing (AS), and dysregulation of alternative
splicing contributes to tumor initiation and progression. Computational analysis of genomic …

MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data

WX Wen, AJ Mead, S Thongjuea - Nucleic Acids Research, 2023 - academic.oup.com
Alternative splicing is an important source of heterogeneity underlying gene expression
between individual cells but remains an understudied area due to the paucity of …

Loss-of-function mutation in PRMT9 causes abnormal synapse development by dysregulation of RNA alternative splicing

L Shen, X Ma, Y Wang, Z Wang, Y Zhang… - Nature …, 2024 - nature.com
Abstract Protein arginine methyltransferase 9 (PRMT9) is a recently identified member of the
PRMT family, yet its biological function remains largely unknown. Here, by characterizing an …

CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5'scRNA-seq data

R Hou, CC Hon, Y Huang - Nature Communications, 2023 - nature.com
Five-prime single-cell RNA-seq (scRNA-seq) has been widely employed to profile cellular
transcriptomes, however, its power of analysing transcription start sites (TSS) has not been …

Overcoming cancer drug-resistance calls for novel strategies targeting abnormal alternative splicing

J Zhang, X Xu, H Deng, L Liu, Y Xiang… - Pharmacology & …, 2024 - Elsevier
Abnormal gene alternative splicing (AS) events are strongly associated with cancer
progression. Here, we summarize AS events that contribute to the development of drug …

VALERIE: visual-based inspection of alternative splicing events at single-cell resolution

WX Wen, AJ Mead, S Thongjuea - PLOS Computational Biology, 2020 - journals.plos.org
We present VALERIE (Visualising alternative splicing events from single-cell ribonucleic
acid-sequencing experiments), an R package for visualising alternative splicing events at …

RNA-Seq analysis reveals localization-associated alternative splicing across 13 cell lines

C Zeng, M Hamada - Genes, 2020 - mdpi.com
Alternative splicing, a ubiquitous phenomenon in eukaryotes, is a regulatory mechanism for
the biological diversity of individual genes. Most studies have focused on the effects of …

Profiling of the full-length transcriptome in abdominal aortic aneurysm using nanopore-based direct RNA sequencing

H Xin, X He, J Li, X Guan, X Liu, Y Wang… - Open …, 2022 - royalsocietypublishing.org
Abdominal aortic aneurysm (AAA) is a common and serious disease with a high mortality
rate, but its genetic determinants have not been fully identified. In this feasibility study, we …

Computational approaches for detecting disease-associated alternative splicing events

J Liu, CX Lin, X Zhang, Z Li, W Huang… - Briefings in …, 2023 - academic.oup.com
Alternative splicing (AS) is a key transcriptional regulation pathway. Recent studies have
shown that AS events are associated with the occurrence of complex diseases. Various …