Non-coding RNAs and their integrated networks

P Zhang, W Wu, Q Chen, M Chen - Journal of integrative …, 2019 - degruyter.com
Eukaryotic genomes are pervasively transcribed. Besides protein-coding RNAs, there are
different types of non-coding RNAs that modulate complex molecular and cellular …

LSD1: more than demethylation of histone lysine residues

B Perillo, A Tramontano, A Pezone… - Experimental & molecular …, 2020 - nature.com
Lysine-specific histone demethylase 1 (LSD1) represents the first example of an identified
nuclear protein with histone demethylase activity. In particular, it plays a special role in the …

[HTML][HTML] Three-dimensional folding and functional organization principles of the Drosophila genome

T Sexton, E Yaffe, E Kenigsberg, F Bantignies… - Cell, 2012 - cell.com
Chromosomes are the physical realization of genetic information and thus form the basis for
its readout and propagation. Here we present a high-resolution chromosomal contact map …

MALAT1 — a paradigm for long noncoding RNA function in cancer

T Gutschner, M Hämmerle, S Diederichs - Journal of molecular medicine, 2013 - Springer
The metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) is a bona fide long
noncoding RNA (lncRNA). MALAT1, also known as nuclear-enriched transcript 2 (NEAT2) …

Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

D Wang, I Garcia-Bassets, C Benner, W Li, X Su… - Nature, 2011 - nature.com
Mammalian genomes are populated with thousands of transcriptional enhancers that
orchestrate cell-type-specific gene expression programs,,,, but how those enhancers are …

Biogenesis and function of nuclear bodies

YS Mao, B Zhang, DL Spector - Trends in Genetics, 2011 - cell.com
Nuclear bodies including nucleoli, Cajal bodies, nuclear speckles, Polycomb bodies, and
paraspeckles are membraneless subnuclear organelles. They are present at steady-state …

ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

L Yang, C Lin, W Liu, J Zhang, KA Ohgi, JD Grinstein… - Cell, 2011 - cell.com
Although eukaryotic nuclei contain distinct architectural structures associated with
noncoding RNAs (ncRNAs), their potential relationship to regulated transcriptional programs …

Progestogens used in postmenopausal hormone therapy: differences in their pharmacological properties, intracellular actions, and clinical effects

FZ Stanczyk, JP Hapgood, S Winer… - Endocrine …, 2013 - academic.oup.com
The safety of progestogens as a class has come under increased scrutiny after the
publication of data from the Women's Health Initiative trial, particularly with respect to breast …

Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances

JD Robin, AT Ludlow, K Batten… - Genes & …, 2014 - genesdev.cshlp.org
While global chromatin conformation studies are emerging, very little is known about the
chromatin conformation of human telomeres. Most studies have focused on the role of …

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

S Schoenfelder, T Sexton, L Chakalova, NF Cope… - Nature …, 2010 - nature.com
The discovery of interchromosomal interactions in higher eukaryotes points to a functional
interplay between genome architecture and gene expression, challenging the view of …