The virome of the last eukaryotic common ancestor and eukaryogenesis
All extant eukaryotes descend from the last eukaryotic common ancestor (LECA), which is
thought to have featured complex cellular organization. To gain insight into LECA biology …
thought to have featured complex cellular organization. To gain insight into LECA biology …
Factors affecting variation of the human gut phageome
The gut microbiome is a dense and metabolically active consortium of microorganisms and
viruses located in the lower gastrointestinal tract of the human body. Bacteria and their …
viruses located in the lower gastrointestinal tract of the human body. Bacteria and their …
Identification of mobile genetic elements with geNomad
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …
understanding their diversity, ecology, biotechnological applications and impact on public …
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata
AP Camargo, S Nayfach, IMA Chen… - Nucleic acids …, 2023 - academic.oup.com
Viruses are widely recognized as critical members of all microbiomes. Metagenomics
enables large-scale exploration of the global virosphere, progressively revealing the …
enables large-scale exploration of the global virosphere, progressively revealing the …
Hybrids of RNA viruses and viroid-like elements replicate in fungi
Earth's life may have originated as self-replicating RNA, and it has been argued that RNA
viruses and viroid-like elements are remnants of such pre-cellular RNA world. RNA viruses …
viruses and viroid-like elements are remnants of such pre-cellular RNA world. RNA viruses …
Extreme summers impact cropland and grassland soil microbiomes
Q Bei, T Reitz, B Schnabel, N Eisenhauer… - The ISME …, 2023 - academic.oup.com
The increasing frequency of extreme weather events highlights the need to understand how
soil microbiomes respond to such disturbances. Here, metagenomics was used to …
soil microbiomes respond to such disturbances. Here, metagenomics was used to …
Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting
H Liao, C Liu, C Ai, T Gao, QE Yang, Z Yu… - The ISME …, 2023 - academic.oup.com
While decomposition of organic matter by bacteria plays a major role in nutrient cycling in
terrestrial ecosystems, the significance of viruses remains poorly understood. Here we …
terrestrial ecosystems, the significance of viruses remains poorly understood. Here we …
The global virome: How much diversity and how many independent origins?
Viruses are considered to be the most abundant biological entities on earth. They also
display striking genetic diversity as emphatically demonstrated by the recent advances of …
display striking genetic diversity as emphatically demonstrated by the recent advances of …
<? mode longmeta?> IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
Plasmids are mobile genetic elements found in many clades of Archaea and Bacteria. They
drive horizontal gene transfer, impacting ecological and evolutionary processes within …
drive horizontal gene transfer, impacting ecological and evolutionary processes within …
Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan
Metatranscriptome sequencing expanded the known diversity of the bacterial RNA virome,
suggesting that additional riboviruses infecting bacterial hosts remain to be discovered …
suggesting that additional riboviruses infecting bacterial hosts remain to be discovered …