Introduction 3. Materials and Methods 3.1. Time lagged correlation coefficient analysis 3.2.
The mixed-effects model for time-course gene expression data 3.3. Methods for clustering …

format of the TRRD complies with the model of hierarchical organization of transcription
regulatory regions of eukaryotic genes. The current version of TRRD covers more than 300 …

Known transcription regulatory signals which generally act as transcription factor binding
sites (TFs) differ significantly in their base composition. Therefore, their occurrence in a …

This chapter contains sections titled: General Features of Eukaryotic Genes, Functional
Signals Description and Identification, ORF, Exon, and Single Gene Prediction Approaches …

It is now clear that the homeobox motif is well conserved across metazoan phyla. It has been
established experimentally that a subset of genes containing this motif plays key roles in the …

Gene expression is presently a major focus in genome analysis, and the experimental data
on regulatory mechanisms and functional transcription factor binding sites are steadily …

The gene for rabbit uteroglobin codes for a small calcium-, steroid-, and biphenyl metabolite-
binding homodimeric protein which is expressed in a variety of epithelial cell types such as …

No general rules have been proposed to account for the functional consequences of gene
regulatory mutations. In a first attempt to establish the nature of such rules, an analysis was …

The task of automatic extraction of the hierarchical structure of eukaryotic gene regulatory
regions is in the junction of the fields of biology, mathematics and information technologies …

The combination of full-scale genomic sequencing with high throughput expression analysis
provides a new and largely unexploited basis for in silico functional genomics. Recent break …