Phenotypic drug discovery: recent successes, lessons learned and new directions
F Vincent, A Nueda, J Lee, M Schenone… - Nature Reviews Drug …, 2022 - nature.com
Many drugs, or their antecedents, were discovered through observation of their effects on
normal or disease physiology. For the past generation, this phenotypic drug discovery …
normal or disease physiology. For the past generation, this phenotypic drug discovery …
Image-based profiling for drug discovery: due for a machine-learning upgrade?
SN Chandrasekaran, H Ceulemans, JD Boyd… - Nature Reviews Drug …, 2021 - nature.com
Image-based profiling is a maturing strategy by which the rich information present in
biological images is reduced to a multidimensional profile, a collection of extracted image …
biological images is reduced to a multidimensional profile, a collection of extracted image …
CellProfiler 3.0: Next-generation image processing for biology
C McQuin, A Goodman, V Chernyshev… - PLoS …, 2018 - journals.plos.org
CellProfiler has enabled the scientific research community to create flexible, modular image
analysis pipelines since its release in 2005. Here, we describe CellProfiler 3.0, a new …
analysis pipelines since its release in 2005. Here, we describe CellProfiler 3.0, a new …
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …
combining raw inputs into layers of intermediate features. These algorithms have recently …
[HTML][HTML] Data-analysis strategies for image-based cell profiling
Image-based cell profiling is a high-throughput strategy for the quantification of phenotypic
differences among a variety of cell populations. It paves the way to studying biological …
differences among a variety of cell populations. It paves the way to studying biological …
High-throughput methods in the discovery and study of biomaterials and materiobiology
The complex interaction of cells with biomaterials (ie, materiobiology) plays an increasingly
pivotal role in the development of novel implants, biomedical devices, and tissue …
pivotal role in the development of novel implants, biomedical devices, and tissue …
Learning representations for image-based profiling of perturbations
Measuring the phenotypic effect of treatments on cells through imaging assays is an efficient
and powerful way of studying cell biology, and requires computational methods for …
and powerful way of studying cell biology, and requires computational methods for …
Evaluation of deep learning strategies for nucleus segmentation in fluorescence images
Identifying nuclei is often a critical first step in analyzing microscopy images of cells and
classical image processing algorithms are most commonly used for this task. Recent …
classical image processing algorithms are most commonly used for this task. Recent …
[HTML][HTML] Repurposing high-throughput image assays enables biological activity prediction for drug discovery
In both academia and the pharmaceutical industry, large-scale assays for drug discovery are
expensive and often impractical, particularly for the increasingly important physiologically …
expensive and often impractical, particularly for the increasingly important physiologically …
Image-based cell phenotyping with deep learning
A cell's phenotype is the culmination of several cellular processes through a complex
network of molecular interactions that ultimately result in a unique morphological signature …
network of molecular interactions that ultimately result in a unique morphological signature …