What are fungal species and how to delineate them?

KWT Chethana, IS Manawasinghe, VG Hurdeal… - Fungal Diversity, 2021 - Springer
This is the opening paper in the special issue of Fungal Diversity, which collates the data on
defining species. Defining and recognizing species has long been a controversial issue …

Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

ASAP: assemble species by automatic partitioning

N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Review and interpretation of trends in DNA barcoding

R DeSalle, P Goldstein - Frontiers in Ecology and Evolution, 2019 - frontiersin.org
Interpretations and analytical practices surrounding DNA barcoding are examined using a
compilation of 3,756 papers (as of December 31, 2018) with “DNA Barcode” in the abstract …

Integrative approaches for species delimitation in Ascomycota

SSN Maharachchikumbura, Y Chen, HA Ariyawansa… - Fungal Diversity, 2021 - Springer
Biodiversity loss from disturbances caused by human activities means that species are
disappearing at an ever increasing rate. The high number of species that have yet to be …

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

P Kapli, S Lutteropp, J Zhang, K Kobert… - …, 2017 - academic.oup.com
Motivation In recent years, molecular species delimitation has become a routine approach
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …

[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity

PF Thomsen, E Willerslev - Biological conservation, 2015 - Elsevier
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …

Convergence of dominance and neglect in flying insect diversity

A Srivathsan, Y Ang, JM Heraty, WS Hwang… - Nature ecology & …, 2023 - nature.com
Most of arthropod biodiversity is unknown to science. Consequently, it has been unclear
whether insect communities around the world are dominated by the same or different taxa …

Comparison of methods for molecular species delimitation across a range of speciation scenarios

A Luo, C Ling, SYW Ho, CD Zhu - Systematic Biology, 2018 - academic.oup.com
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …