Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann… - RNA, 2023 - rnajournal.cshlp.org
The tremendous rate with which data is generated and analysis methods emerge makes it
increasingly difficult to keep track of their domain of applicability, assumptions, limitations …
increasingly difficult to keep track of their domain of applicability, assumptions, limitations …
Regulation and function of alternative polyadenylation in development and differentiation
L Gallicchio, GH Olivares, CW Berry, MT Fuller - RNA biology, 2023 - Taylor & Francis
Alternative processing of nascent mRNAs is widespread in eukaryotic organisms and greatly
impacts the output of gene expression. Specifically, alternative cleavage and …
impacts the output of gene expression. Specifically, alternative cleavage and …
The peptide woods are lovely, dark and deep: Hunting for novel cancer antigens
Harnessing the patient's immune system to control a tumor is a proven avenue for cancer
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …
Stress responses of plants through transcriptome plasticity by mRNA alternative polyadenylation
J Zhou, QQ Li - Molecular Horticulture, 2023 - Springer
The sessile nature of plants confines their responsiveness to changing environmental
conditions. Gene expression regulation becomes a paramount mechanism for plants to …
conditions. Gene expression regulation becomes a paramount mechanism for plants to …
Cellular dynamics of distinct skeletal cells and the development of osteosarcoma
S Otani, M Ohnuma, K Ito, Y Matsushita - Frontiers in Endocrinology, 2023 - frontiersin.org
Bone contributes to the maintenance of vital biological activities. At the cellular level,
multiple types of skeletal cells, including skeletal stem and progenitor cells (SSPCs) …
multiple types of skeletal cells, including skeletal stem and progenitor cells (SSPCs) …
Dynamics of alternative polyadenylation in single root cells of Arabidopsis thaliana
X Bi, S Zhu, F Liu, X Wu - Frontiers in Plant Science, 2024 - frontiersin.org
Introduction Single-cell RNA-seq (scRNA-seq) technologies have been widely used to
reveal the diversity and complexity of cells, and pioneering studies on scRNA-seq in plants …
reveal the diversity and complexity of cells, and pioneering studies on scRNA-seq in plants …
vizAPA: visualizing dynamics of alternative polyadenylation from bulk and single-cell data
Motivation Alternative polyadenylation (APA) is a widespread post-transcriptional regulatory
mechanism across all eukaryotes. With the accumulation of genome-wide APA sites …
mechanism across all eukaryotes. With the accumulation of genome-wide APA sites …
Alternative Transcripts Diversify Genome Function for Phenome Relevance to Health and Diseases
SA Carrion, JJ Michal, Z Jiang - Genes, 2023 - mdpi.com
Manipulation using alternative exon splicing (AES), alternative transcription start (ATS), and
alternative polyadenylation (APA) sites are key to transcript diversity underlying health and …
alternative polyadenylation (APA) sites are key to transcript diversity underlying health and …
人工智能加速作物表观遗传设计育种.
郭位军, 李东维, 谢上, 杨立文, 李聪… - … & Technology (1008 …, 2022 - search.ebscohost.com
全球人口持续增长, 极端天气频发等因素给全球粮食安全带来新的挑战, 需要开辟新的育种途径
提升作物育种性状. 近年来, 生物技术(biotechnology, BT) 与人工智能, 大数据等信息技术 …
提升作物育种性状. 近年来, 生物技术(biotechnology, BT) 与人工智能, 大数据等信息技术 …
Integrative Analysis of Genomic Data Types and AI Methodologies in Healthcare Applications
RAA Rahem, F Al-Akayleh - 2024 2nd International Conference …, 2024 - ieeexplore.ieee.org
The integration of high-throughput genomic sequencing and advanced AI algorithms is
revolutionizing the fields of medicine and pharmaceuticals, particularly in the areas of …
revolutionizing the fields of medicine and pharmaceuticals, particularly in the areas of …