PbrMYB169 positively regulates lignification of stone cells in pear fruit

C Xue, JL Yao, YS Xue, GQ Su, L Wang… - Journal of …, 2019 - academic.oup.com
Stone cells negatively affect fruit quality because of their firm and lignified cell walls, so are
targets for reduction in pear breeding programmes. However, there is only limited …

[HTML][HTML] A Concise Review on Multi-Omics Data Integration for Terroir Analysis in Vitis vinifera

PJ Fabres, C Collins, TR Cavagnaro… - Frontiers in plant …, 2017 - frontiersin.org
Vitis vinifera (grapevine) is one of the most important fruit crops, both for fresh consumption
and wine and spirit production. The term terroir is frequently used in viticulture and the wine …

[HTML][HTML] Transcriptional regulatory network analysis of MYB transcription factor family genes in rice

S Smita, A Katiyar, V Chinnusamy… - Frontiers in plant …, 2015 - frontiersin.org
MYB transcription factor (TF) is one of the largest TF families and regulates defense
responses to various stresses, hormone signaling as well as many metabolic and …

[HTML][HTML] AppleMDO: a multi-dimensional omics database for apple co-expression networks and chromatin states

L Da, Y Liu, J Yang, T Tian, J She, X Ma… - Frontiers in Plant …, 2019 - frontiersin.org
As an economically important crop, apple is one of the most cultivated fruit trees in
temperate regions worldwide. Recently, a large number of high-quality transcriptomic and …

[HTML][HTML] Constructing integrated networks for identifying new secondary metabolic pathway regulators in grapevine: recent applications and future opportunities

DCJ Wong, JT Matus - Frontiers in plant science, 2017 - frontiersin.org
Representing large biological data as networks is becoming increasingly adopted for
predicting gene function while elucidating the multifaceted organization of life processes. In …

[HTML][HTML] Gene co-expression network tools and databases for crop improvement

RA Zainal-Abidin, S Harun, V Vengatharajuloo… - Plants, 2022 - mdpi.com
Transcriptomics has significantly grown as a functional genomics tool for understanding the
expression of biological systems. The generated transcriptomics data can be utilised to …

[HTML][HTML] Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits

S Savoi, A Santiago, L Orduña, JT Matus - Frontiers in Plant Science, 2022 - frontiersin.org
Transcriptomics and metabolomics are methodologies being increasingly chosen to perform
molecular studies in grapevine (Vitis vinifera L.), focusing either on plant and fruit …

[HTML][HTML] Omics approaches for understanding grapevine berry development: regulatory networks associated with endogenous processes and environmental …

A Serrano, C Espinoza, G Armijo… - Frontiers in plant …, 2017 - frontiersin.org
Grapevine fruit development is a dynamic process that can be divided into three stages:
formation (I), lag (II), and ripening (III), in which physiological and biochemical changes …

[HTML][HTML] Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in …

DCJ Wong, R Lopez Gutierrez, N Dimopoulos… - BMC genomics, 2016 - Springer
Background In wine grape production, management practices have been adopted to
optimize grape and wine quality attributes by producing, or screening for, berries of smaller …

[HTML][HTML] Connectivity in gene coexpression networks negatively correlates with rates of molecular evolution in flowering plants

RR Masalia, AJ Bewick, JM Burke - PLoS One, 2017 - journals.plos.org
Gene coexpression networks are a useful tool for summarizing transcriptomic data and
providing insight into patterns of gene regulation in a variety of species. Though there has …