The role of noncoding RNAs in Parkinson's disease: biomarkers and associations with pathogenic pathways

MC Kuo, SCH Liu, YF Hsu, RM Wu - Journal of biomedical science, 2021 - Springer
The discovery of various noncoding RNAs (ncRNAs) and their biological implications is a
growing area in cell biology. Increasing evidence has revealed canonical and noncanonical …

Uncovering the impacts of alternative splicing on the proteome with current omics techniques

M Reixachs‐Solé, E Eyras - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
The high‐throughput sequencing of cellular RNAs has underscored a broad effect of isoform
diversification through alternative splicing on the transcriptome. Moreover, the differential …

Human embryonic genome activation initiates at the one-cell stage

M Asami, BYH Lam, MK Ma, K Rainbow, S Braun… - Cell Stem Cell, 2022 - cell.com
In human embryos, the initiation of transcription (embryonic genome activation [EGA]) occurs
by the eight-cell stage, but its exact timing and profile are unclear. To address this, we …

What can ribo-seq, immunopeptidomics, and proteomics tell us about the noncanonical proteome?

JR Prensner, JG Abelin, LW Kok, KR Clauser… - Molecular & Cellular …, 2023 - ASBMB
Abstract Ribosome profiling (Ribo-Seq) has proven transformative for our understanding of
the human genome and proteome by illuminating thousands of noncanonical sites of …

Chronically high stress hormone levels dysregulate sperm long noncoding RNAs and their embryonic microinjection alters development and affective behaviours

LB Hoffmann, B Li, Q Zhao, W Wei, LJ Leighton… - Molecular …, 2024 - nature.com
Previous studies on paternal epigenetic inheritance have shown that sperm RNAs play a
role in this type of inheritance. The microinjection of sperm small noncoding RNAs into …

Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells

ED Karousis, F Gypas, M Zavolan, O Mühlemann - Genome biology, 2021 - Springer
Background Nonsense-mediated mRNA decay (NMD) is a eukaryotic, translation-
dependent degradation pathway that targets mRNAs with premature termination codons and …

Comprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity

X Ye, C He, Y Yang, YH Sun, S Xiong… - Genome …, 2023 - genome.cshlp.org
Animal venom systems have emerged as valuable models for investigating how novel
polygenic phenotypes may arise from gene evolution by varying molecular mechanisms …

Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

A Mikheenko, AD Prjibelski, A Joglekar… - Genome …, 2022 - genome.cshlp.org
Long-read transcriptomics require understanding error sources inherent to technologies.
Current approaches cannot compare methods for an individual RNA molecule. Here, we …

mRNA vaccines: Why is the biology of retroposition ignored?

T Domazet-Lošo - Genes, 2022 - mdpi.com
The major advantage of mRNA vaccines over more conventional approaches is their
potential for rapid development and large-scale deployment in pandemic situations. In the …

[HTML][HTML] A program of successive gene expression in mouse one-cell embryos

M Asami, BYH Lam, M Hoffmann, T Suzuki, X Lu… - Cell Reports, 2023 - cell.com
At the moment of union in fertilization, sperm and oocyte are transcriptionally silent. The
ensuing onset of embryonic transcription (embryonic genome activation [EGA]) is critical for …