A proposed metric set for evaluation of genome assembly quality

P Wang, F Wang - Trends in Genetics, 2023 - cell.com
Quality control is essential for genome assemblies; however, a consensus has yet to be
reached on what metrics should be adopted for the evaluation of assembly quality. N50 is …

[HTML][HTML] Wood formation under changing environment: Omics approaches to elucidate the mechanisms driving the early-to-latewood transition in Conifers

S Traversari, A Giovannelli, G Emiliani - Forests, 2022 - mdpi.com
The global change scenarios highlight the urgency of clarifying the mechanisms driving the
determination of wood traits in forest trees. Coniferous xylem is characterized by the …

Assembly of the complete mitochondrial genome of an endemic plant, Scutellaria tsinyunensis, revealed the existence of two conformations generated by a repeat …

J Li, Y Xu, Y Shan, X Pei, S Yong, C Liu, J Yu - Planta, 2021 - Springer
Main conclusion We assembled the complete mitochondrial genome of Scutellaria
tsinyunensis in this study. Repeat-mediated recombination resulted in the formation of two …

[HTML][HTML] Complex Physical Structure of Complete Mitochondrial Genome of Quercus acutissima (Fagaceae): A Significant Energy Plant

D Liu, H Guo, J Zhu, K Qu, Y Chen, Y Guo, P Ding… - Genes, 2022 - mdpi.com
Quercus acutissima Carruth. is a Chinese important energy plant with high ecological and
economic values. While the species chloroplast genome has been reported, its …

[HTML][HTML] Assembly and analysis of the first complete mitochondrial genome of Punica granatum and the gene transfer from chloroplast genome

G Lu, K Zhang, Y Que, Y Li - Frontiers in Plant Science, 2023 - frontiersin.org
Pomegranate (Punica granatum L.) is one of the oldest fruits with edible, medicinal and
ornamental values. However, there is no report on the mitochondrial genome of …

[PDF][PDF] Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization

A Fischer, J Dotzek, D Walther… - NAR Genomics and …, 2022 - academic.oup.com
Plant mitochondrial genomes display an enormous structural complexity, as recombining
repeat-pairs lead to the generation of various sub-genomic molecules, rendering these …

[HTML][HTML] Structural and gene composition variation of the complete mitochondrial genome of Mammillaria huitzilopochtli (Cactaceae, Caryophyllales), revealed by de …

D Cruz Plancarte, S Solórzano - BMC genomics, 2023 - Springer
Background Structural descriptions of complete genomes have elucidated evolutionary
processes in angiosperms. In Cactaceae (Caryophyllales), a high structural diversity of the …

[HTML][HTML] Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

J Li, Y Chen, Y Liu, C Wang, L Li, Y Chao - BMC genomics, 2023 - Springer
Background Plants possess mitochondrial genomes that are large and complex compared
to animals. Despite their size, plant mitochondrial genomes do not contain significantly more …

[HTML][HTML] Comparative analysis of the chloroplast and mitochondrial genomes of Saposhnikovia divaricata revealed the possible transfer of plastome repeat regions …

Y Ni, J Li, H Chen, J Yue, P Chen, C Liu - BMC genomics, 2022 - Springer
Abstract Background Saposhnikovia divaricata (Turcz.) Schischk. is a perennial herb whose
dried roots are commonly used as a source of traditional medicines. To elucidate the …

[HTML][HTML] Complete mitochondrial genome of Thuja sutchuenensis and its implications on evolutionary analysis of complex mitogenome architecture in Cupressaceae

C Xia, J Li, Y Zuo, P He, H Zhang, X Zhang, B Wang… - BMC Plant …, 2023 - Springer
Background The complex physical structure and abundant repeat sequences make it difficult
to assemble the mitogenomes of seed plants, especially gymnosperms. Only approximately …