The Chicken Pan-Genome Reveals Gene Content Variation and a Promoter Region Deletion in IGF2BP1 Affecting Body Size

K Wang, H Hu, Y Tian, J Li, A Scheben… - Molecular biology …, 2021 - academic.oup.com
Domestication and breeding have reshaped the genomic architecture of chicken, but the
retention and loss of genomic elements during these evolutionary processes remain …

Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication

F Zhu, ZT Yin, Z Wang, J Smith, F Zhang… - Nature …, 2021 - nature.com
Domestic ducks are raised for meat, eggs and feather down, and almost all varieties are
descended from the Mallard (Anas platyrhynchos). Here, we report chromosome-level high …

The GASA Gene Family in Cacao (Theobroma cacao, Malvaceae): Genome Wide Identification and Expression Analysis

Abdullah, S Faraji, F Mehmood, HMT Malik, I Ahmed… - Agronomy, 2021 - mdpi.com
The gibberellic acid-stimulated Arabidopsis (GASA/GAST) gene family is widely distributed
in plants and involved in various physiological and biological processes. These genes also …

The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities

V Peona, OM Palacios-Gimenez… - … of the Royal …, 2021 - royalsocietypublishing.org
It is a broadly observed pattern that the non-recombining regions of sex-limited
chromosomes (Y and W) accumulate more repeats than the rest of the genome, even in …

New perspectives on avian models for studies of basic aging processes

JM Harper, DJ Holmes - Biomedicines, 2021 - mdpi.com
Avian models have the potential to elucidate basic cellular and molecular mechanisms
underlying the slow aging rates and exceptional longevity typical of this group of vertebrates …

Genome Size Variation and Evolution Driven by Transposable Elements in the Genus Oryza

S Dai, X Zhu, G Hutang, J Li, J Tian, X Jiang… - Frontiers in Plant …, 2022 - frontiersin.org
Genome size variation and evolutionary forces behind have been long pursued in flowering
plants. The genus Oryza, consisting of approximately 25 wild species and two cultivated rice …

The evolution of early‐life telomere length, pace‐of‐life and telomere‐chromosome length dynamics in birds

ML Pepke, TH Ringsby, DTA Eisenberg - Molecular ecology, 2023 - Wiley Online Library
Telomeres, the short DNA sequences that protect chromosome ends, are an ancient
molecular structure, which is highly conserved across most eukaryotes. Species differ in …

RETRACTED ARTICLE: Genetic basis of genome size variation of wheat

M Zhang, X Qiu - Functional & Integrative Genomics, 2023 - Springer
Research on various species has revealed a connection between genome size variation
and the physiological and ecological characteristics of the species, suggesting that it could …

Genetic assessment and candidate genes identification for breed-specific characteristics of Qingyuan partridge chicken based on runs of homozygosity

X Zhang, L Yang, Z Xie, J Gan, P Zhu, J Song, H Kang… - BMC genomics, 2024 - Springer
Background Several core breeding and supporting lines of the Qingyuan partridge chicken,
a representative local chicken breed in China, have been developed over 20 years …