The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons

J García-Martínez, L Delgado-Ramos… - Nucleic acids …, 2016 - academic.oup.com
We analyzed 80 different genomic experiments, and found a positive correlation between
both RNA polymerase II transcription and mRNA degradation with growth rates in yeast …

Noncanonical transcript forms in yeast and their regulation during environmental stress

OK Yoon, RB Brem - Rna, 2010 - rnajournal.cshlp.org
Surveys of transcription in many organisms have observed widespread expression of RNAs
with no known function, encoded within and between canonical coding genes. The search to …

Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast

DA Medina, A Jordán-Pla, G Millán-Zambrano… - Frontiers in …, 2014 - frontiersin.org
The 5′ to 3′ exoribonuclease Xrn1 is a large protein involved in cytoplasmatic mRNA
degradation as a critical component of the major decaysome. Its deletion in the yeast …

Translational capacity of a cell is determined during transcription elongation via the Ccr4-Not complex

I Gupta, Z Villanyi, S Kassem, C Hughes… - Cell reports, 2016 - cell.com
The current understanding of gene expression considers transcription and translation to be
independent processes. Challenging this notion, we found that translation efficiency is …

FACT prevents the accumulation of free histones evicted from transcribed chromatin and a subsequent cell cycle delay in G1

M Morillo-Huesca, D Maya, MC Muñoz-Centeno… - PLoS …, 2010 - journals.plos.org
The FACT complex participates in chromatin assembly and disassembly during transcription
elongation. The yeast mutants affected in the SPT16 gene, which encodes one of the FACT …

Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae

CD Kaplan - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2013 - Elsevier
Transcription by RNA polymerase II (Pol II), and all RNA polymerases for that matter, may be
understood as comprising two cycles. The first cycle relates to the basic mechanism of the …

Wide-ranging and unexpected consequences of altered Pol II catalytic activity in vivo

I Malik, C Qiu, T Snavely, CD Kaplan - Nucleic Acids Research, 2017 - academic.oup.com
Here we employ a set of RNA Polymerase II (Pol II) activity mutants to determine the
consequences of increased or decreased Pol II catalysis on gene expression in …

Gene promoters dictate histone occupancy within genes

R Perales, B Erickson, L Zhang, H Kim… - The EMBO …, 2013 - embopress.org
Spt6 is a transcriptional elongation factor and histone chaperone that reassembles
transcribed chromatin. Genome‐wide H3 mapping showed that Spt6 preferentially maintains …

Prefoldin-like Bud27 influences the transcription of ribosomal components and ribosome biogenesis in Saccharomyces cerevisiae

V Martínez-Fernández, A Cuevas-Bermúdez… - Rna, 2020 - rnajournal.cshlp.org
Understanding the functional connection that occurs for the three nuclear RNA polymerases
to synthesize ribosome components during the ribosome biogenesis process has been the …

Multifaceted roles of ICP22/ORF63 proteins in the life cycle of human herpesviruses

Y Wu, Q Yang, M Wang, S Chen, R Jia… - Frontiers in …, 2021 - frontiersin.org
Herpesviruses are extremely successful parasites that have evolved over millions of years to
develop a variety of mechanisms to coexist with their hosts and to maintain host-to-host …