Establishment and maintenance of chromatin architecture are promoted independently of transcription by the histone chaperone FACT and H3-K56 acetylation in …
LL McCullough, TH Pham, TJ Parnell, Z Connell… - Genetics, 2019 - academic.oup.com
Using a combination of in vitro biochemistry, genetics, and genomics, McCullough and
Pham et al. explore how the histone: DNA contact at the entry/exit site of nucleosomes …
Pham et al. explore how the histone: DNA contact at the entry/exit site of nucleosomes …
PKA-chromatin association at stress responsive target genes from Saccharomyces cerevisiae
L Baccarini, F Martínez-Montañés, S Rossi… - … et Biophysica Acta (BBA …, 2015 - Elsevier
Gene expression regulation by intracellular stimulus-activated protein kinases is essential
for cell adaptation to environmental changes. There are three PKA catalytic subunits in …
for cell adaptation to environmental changes. There are three PKA catalytic subunits in …
The transcription factor Spn1 regulates gene expression via a highly conserved novel structural motif
V Pujari, CA Radebaugh, JV Chodaparambil… - Journal of molecular …, 2010 - Elsevier
Spn1/Iws1 plays essential roles in the regulation of gene expression by RNA polymerase II
(RNAPII), and it is highly conserved in organisms ranging from yeast to humans. Spn1 …
(RNAPII), and it is highly conserved in organisms ranging from yeast to humans. Spn1 …
The 3-base periodicity and codon usage of coding sequences are correlated with gene expression at the level of transcription elongation
E Trotta - PLoS One, 2011 - journals.plos.org
Background Gene transcription is regulated by DNA transcriptional regulatory elements,
promoters and enhancers that are located outside the coding regions. Here, we examine the …
promoters and enhancers that are located outside the coding regions. Here, we examine the …
Advances in S. cerevisiae Engineering for Xylose Fermentation and Biofuel Production: Balancing Growth, Metabolism, and Defense
ER Wagner, AP Gasch - Journal of Fungi, 2023 - mdpi.com
Genetically engineering microorganisms to produce chemicals has changed the
industrialized world. The budding yeast Saccharomyces cerevisiae is frequently used in …
industrialized world. The budding yeast Saccharomyces cerevisiae is frequently used in …
The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation
F Gomez-Herreros, T Margaritis… - Nucleic acids …, 2017 - academic.oup.com
Ribosome assembly requires the concerted expression of hundreds of genes, which are
transcribed by all three nuclear RNA polymerases. Transcription elongation involves …
transcribed by all three nuclear RNA polymerases. Transcription elongation involves …
The peptidyl prolyl isomerase Rrd1 regulates the elongation of RNA polymerase II during transcriptional stresses
Rapamycin is an anticancer agent and immunosuppressant that acts by inhibiting the TOR
signaling pathway. In yeast, rapamycin mediates a profound transcriptional response for …
signaling pathway. In yeast, rapamycin mediates a profound transcriptional response for …
External conditions inversely change the RNA polymerase II elongation rate and density in yeast
A Miguel, F Montón, T Li, F Gómez-Herreros… - … et Biophysica Acta (BBA …, 2013 - Elsevier
Elongation speed is a key parameter in RNA polymerase II (RNA pol II) activity. It affects the
transcription rate, while it is conditioned by the physicochemical environment it works in at …
transcription rate, while it is conditioned by the physicochemical environment it works in at …
Yeast Crf1p is an activator with different roles in regulation of target genes
Under stress conditions, ribosome biogenesis is downregulated. This process requires that
expression of ribosomal RNA, ribosomal protein, and ribosome biogenesis genes be …
expression of ribosomal RNA, ribosomal protein, and ribosome biogenesis genes be …
Plants versus Fungi and Oomycetes: Pathogenesis, Defense and Counter-Defense in the Proteomics Era
A El Hadrami, AF El-Bebany, Z Yao, LR Adam… - International Journal of …, 2012 - mdpi.com
Plant-fungi and plant-oomycete interactions have been studied at the proteomic level for
many decades. However, it is only in the last few years, with the development of new …
many decades. However, it is only in the last few years, with the development of new …