Executable cancer models: successes and challenges

MA Clarke, J Fisher - Nature Reviews Cancer, 2020 - nature.com
Making decisions on how best to treat cancer patients requires the integration of different
data sets, including genomic profiles, tumour histopathology, radiological images, proteomic …

[HTML][HTML] Translating insights into tumor evolution to clinical practice: promises and challenges

MW Fittall, P Van Loo - Genome medicine, 2019 - Springer
Accelerating technological advances have allowed the widespread genomic profiling of
tumors. As yet, however, the vast catalogues of mutations that have been identified have …

[HTML][HTML] Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

Y Rubanova, R Shi, CF Harrigan, R Li… - Nature …, 2020 - nature.com
The type and genomic context of cancer mutations depend on their causes. These causes
have been characterized using signatures that represent mutation types that co-occur in the …

[HTML][HTML] Artificial intelligence in nephrology: how can artificial intelligence augment nephrologists' intelligence?

G Xie, T Chen, Y Li, T Chen, X Li, Z Liu - Kidney Diseases, 2020 - karger.com
Background: Artificial intelligence (AI) now plays a critical role in almost every area of our
daily lives and academic disciplines due to the growth of computing power, advances in …

[HTML][HTML] A functional genetic screen defines the AKT-induced senescence signaling network

KT Chan, S Blake, H Zhu, J Kang, AS Trigos… - Cell Death & …, 2020 - nature.com
Exquisite regulation of PI3K/AKT/mTORC1 signaling is essential for homeostatic control of
cell growth, proliferation, and survival. Aberrant activation of this signaling network is an …

[HTML][HTML] Primary and acquired resistance to first-line therapy for clear cell renal cell carcinoma

S Astore, G Baciarello, L Cerbone… - Cancer Drug …, 2023 - ncbi.nlm.nih.gov
The introduction of first-line combinations had improved the outcomes for metastatic renal
cell carcinoma (mRCC) compared to sunitinib. However, some patients either have inherent …

[HTML][HTML] Convergent TP53 loss and evolvability in cancer

MB Mansur, M Greaves - BMC Ecology and Evolution, 2023 - Springer
Cancer cell populations evolve by a stepwise process involving natural selection of the fittest
variants within a tissue ecosystem context and as modified by therapy. Genomic scrutiny of …

[HTML][HTML] Multiregion WES of metastatic pancreatic neuroendocrine tumors revealed heterogeneity in genomic alterations, immune microenvironment and evolutionary …

Y Jiang, Y Dong, S Zhao, D Liu, J Zhang, X Xu… - Cell Communication and …, 2024 - Springer
Pancreatic neuroendocrine tumors (PanNETs), though uncommon, have a high likelihood of
spreading to other body parts. Previously, the genetic diversity and evolutionary patterns in …

Multi‐omics analysis of intra‐tumoural and inter‐tumoural heterogeneity in pancreatic ductal adenocarcinoma

X Liu, W Wang, X Liu, Z Zhang, L Yu… - Clinical and …, 2022 - Wiley Online Library
The poor prognosis of pancreatic ductal adenocarcinoma (PDAC) is associated with the
tumour heterogeneity. To explore intra‐and inter‐tumoural heterogeneity in PDAC, we …

Towards multi-omics characterization of tumor heterogeneity: a comprehensive review of statistical and machine learning approaches

D Lee, Y Park, S Kim - Briefings in bioinformatics, 2021 - academic.oup.com
The multi-omics molecular characterization of cancer opened a new horizon for our
understanding of cancer biology and therapeutic strategies. However, a tumor biopsy …