Prediction of drug–protein interaction based on dual channel neural networks with attention mechanism

D Tan, H Jiang, H Li, Y Xie, Y Su - Briefings in Functional …, 2024 - academic.oup.com
The precise identification of drug–protein inter action (DPI) can significantly speed up the
drug discovery process. Bioassay methods are time-consuming and expensive to screen for …

ML-FGAT: Identification of multi-label protein subcellular localization by interpretable graph attention networks and feature-generative adversarial networks

C Wang, Y Wang, P Ding, S Li, X Yu, B Yu - Computers in Biology and …, 2024 - Elsevier
The prediction of multi-label protein subcellular localization (SCL) is a pivotal area in
bioinformatics research. Recent advancements in protein structure research have facilitated …

[HTML][HTML] Semi-supervised heterogeneous graph contrastive learning for drug–target interaction prediction

K Yao, X Wang, W Li, H Zhu, Y Jiang, Y Li… - Computers in Biology …, 2023 - Elsevier
Identification of drug–target interactions (DTIs) is an important step in drug discovery and
drug repositioning. In recent years, graph-based methods have attracted great attention and …

Current and future directions in network biology

M Zitnik, MM Li, A Wells, K Glass, DM Gysi… - arXiv preprint arXiv …, 2023 - arxiv.org
Network biology, an interdisciplinary field at the intersection of computational and biological
sciences, is critical for deepening understanding of cellular functioning and disease. While …

A comprehensive review of the recent advances on predicting drug-target affinity based on deep learning

X Zeng, SJ Li, SQ Lv, ML Wen, Y Li - Frontiers in Pharmacology, 2024 - frontiersin.org
Accurate calculation of drug-target affinity (DTA) is crucial for various applications in the
pharmaceutical industry, including drug screening, design, and repurposing. However …

THGNCDA: circRNA–disease association prediction based on triple heterogeneous graph network

Y Guo, M Yi - Briefings in Functional Genomics, 2023 - academic.oup.com
Circular RNAs (circRNAs) are a class of noncoding RNA molecules featuring a closed
circular structure. They have been proved to play a significant role in the reduction of many …

HiSIF-DTA: a hierarchical semantic information fusion framework for drug-target affinity prediction

X Bi, S Zhang, W Ma, H Jiang… - IEEE Journal of …, 2023 - ieeexplore.ieee.org
Accurately identifying drug-target affinity (DTA) plays a significant role in promoting drug
discovery and has attracted increasing attention in recent years. Exploring appropriate …

Hierarchical and dynamic graph attention network for drug-disease association prediction

S Huang, M Wang, X Zheng, J Chen… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
In the realm of biomedicine, the prediction of associations between drugs and diseases
holds significant importance. Yet, conventional wet lab experiments often fall short of …

A deep neural network-based co-coding method to predict drug-protein interactions by analyzing the feature consistency between drugs and proteins

C Sun, R Tang, J Huang, J Wei… - IEEE/ACM Transactions …, 2023 - ieeexplore.ieee.org
Exploring drug-protein interactions (DPIs) through computational methods can effectively
reduce the workload and the cost of DPI identification. Previous works try to predict DPIs by …

IMAEN: An interpretable molecular augmentation model for drug–target interaction prediction

J Zhang, Z Liu, Y Pan, H Lin, Y Zhang - Expert Systems with Applications, 2024 - Elsevier
Drug discovery is a crucial aspect of biomedical research, and predicting drug–target
interactions (DTIs) is a vital step in this process. Graph neural networks (GNNs) have …