Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
F Marlétaz, A Couloux, J Poulain, K Labadie… - Cell Genomics, 2023 - cell.com
Sea urchins are emblematic models in developmental biology and display several
characteristics that set them apart from other deuterostomes. To uncover the genomic cues …
characteristics that set them apart from other deuterostomes. To uncover the genomic cues …
Amphioxus as a model to study the evolution of development in chordates
S d'Aniello, S Bertrand, H Escriva - Elife, 2023 - elifesciences.org
Cephalochordates and tunicates represent the only two groups of invertebrate chordates,
and extant cephalochordates–commonly known as amphioxus or lancelets–are considered …
and extant cephalochordates–commonly known as amphioxus or lancelets–are considered …
Insights into RAG Evolution from the Identification of “Missing Link” Family A RAGL Transposons
EC Martin, L Le Targa… - Molecular Biology …, 2023 - academic.oup.com
A series of “molecular domestication” events are thought to have converted an invertebrate
RAG-like (RAGL) transposase into the RAG1–RAG2 (RAG) recombinase, a critical enzyme …
RAG-like (RAGL) transposase into the RAG1–RAG2 (RAG) recombinase, a critical enzyme …
Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis
V Daric, M Lanoizelet, H Mayeur… - Genome Biology and …, 2024 - academic.oup.com
Ascidian embryos have been studied since the birth of experimental embryology at the end
of the 19th century. They represent textbook examples of mosaic development characterized …
of the 19th century. They represent textbook examples of mosaic development characterized …
Ohnologs and SSD paralogs differ in genomic and expression features related to dosage constraints
Z Vance, A McLysaght - Genome Biology and Evolution, 2023 - academic.oup.com
Gene duplication is recognized as a critical process in genome evolution; however, many
questions about this process remain unanswered. Although gene duplicability has been …
questions about this process remain unanswered. Although gene duplicability has been …
Retinoic acid and POU genes in developing amphioxus: A focus on neural development
POU genes are a family of evolutionarily conserved transcription factors with key functions in
cell type specification and neurogenesis. In vitro experiments have indicated that the …
cell type specification and neurogenesis. In vitro experiments have indicated that the …
Conservation of cis-Regulatory Syntax Underlying Deuterostome Gastrulation
Throughout embryonic development, the shaping of the functional and morphological
characteristics of embryos is orchestrated by an intricate interaction between transcription …
characteristics of embryos is orchestrated by an intricate interaction between transcription …
Evolution of tissue-specific expression of ancestral genes across vertebrates and insects
F Mantica, LP Iñiguez, Y Marquez… - Nature Ecology & …, 2024 - nature.com
Regulation of gene expression is arguably the main mechanism underlying the phenotypic
diversity of tissues within and between species. Here we assembled an extensive …
diversity of tissues within and between species. Here we assembled an extensive …
Genome-wide transcriptomics and microRNAomics analyses uncover multi-faceted mechanisms to cope with copper stress in ancient macrobenthos amphioxus
LY Yang, QH Zhu, JY Chen, LB Lin, MZ Liang… - Journal of Hazardous …, 2023 - Elsevier
The mechanisms underlying the toxicity of environmental stress are unclear for marine
macrobenthos. Copper/Cu has posed the most serious threats to amphioxus, an ancient and …
macrobenthos. Copper/Cu has posed the most serious threats to amphioxus, an ancient and …
A novel C-type lectin protein (BjCTL5) interacts with apoptosis stimulating proteins of p53 (ASPP) to activate NF-κB signaling pathway in primitive chordate
W Fan, J Chen, Y Cao, J Tan, J Li, S Wang, P Jin… - Developmental & …, 2024 - Elsevier
C-type lectin proteins (CTLs), a group of pattern recognition receptors (PRRs), play pivotal
roles in immune responses. However, the signal transduction and regulation of CTLs in …
roles in immune responses. However, the signal transduction and regulation of CTLs in …