Synergistic antibacterial effects of herbal extracts and antibiotics on methicillin-resistant Staphylococcus aureus: A computational and experimental study

CF Kuok, SO Hoi, CF Hoi, CH Chan… - Experimental …, 2017 - journals.sagepub.com
Antibiotic resistance has become a serious global concern, and the discovery of
antimicrobial herbal constituents may provide valuable solutions to overcome the problem …

Theileria parasites secrete a prolyl isomerase to maintain host leukocyte transformation

J Marsolier, M Perichon, JD DeBarry, BO Villoutreix… - Nature, 2015 - nature.com
Infectious agents develop intricate mechanisms to interact with host cell pathways and hijack
their genetic and epigenetic machinery to change host cell phenotypic states. Among the …

Discovery of N-((4-([1,2,4]Triazolo[1,5-a]pyridin-6-yl)-5-(6-methylpyridin-2-yl)-1H-imidazol-2-yl)methyl)-2-fluoroaniline (EW-7197): A Highly Potent, Selective, and …

CH Jin, M Krishnaiah, D Sreenu… - Journal of medicinal …, 2014 - ACS Publications
A series of 2-substituted-4-([1, 2, 4] triazolo [1, 5-a] pyridin-6-yl)-5-(6-methylpyridin-2-yl)
imidazoles was synthesized and evaluated to optimize a prototype inhibitor of TGF-β type I …

Decoys selection in benchmarking datasets: overview and perspectives

M Réau, F Langenfeld, JF Zagury, N Lagarde… - Frontiers in …, 2018 - frontiersin.org
Virtual Screening (VS) is designed to prospectively help identifying potential hits, ie,
compounds capable of interacting with a given target and potentially modulate its activity …

Artificial intelligence in the early stages of drug discovery

CN Cavasotto, JI Di Filippo - Archives of biochemistry and biophysics, 2021 - Elsevier
Although the use of computational methods within the pharmaceutical industry is well
established, there is an urgent need for new approaches that can improve and optimize the …

DeltaDelta neural networks for lead optimization of small molecule potency

J Jiménez-Luna, L Pérez-Benito, G Martinez-Rosell… - Chemical …, 2019 - pubs.rsc.org
The capability to rank different potential drug molecules against a protein target for potency
has always been a fundamental challenge in computational chemistry due to its importance …

MetaDOCK: a combinatorial molecular docking approach

IM Kamal, S Chakrabarti - ACS omega, 2023 - ACS Publications
Molecular docking plays a major role in academic and industrial drug screening and
discovery processes. Despite the availability of numerous docking software packages, there …

CSAR benchmark exercise 2011–2012: evaluation of results from docking and relative ranking of blinded congeneric series

KL Damm-Ganamet, RD Smith… - Journal of chemical …, 2013 - ACS Publications
The Community Structure–Activity Resource (CSAR) recently held its first blinded exercise
based on data provided by Abbott, Vertex, and colleagues at the University of Michigan, Ann …

Design and prediction of ADME/Tox properties of novel magnolol derivatives as anticancer agents for NSCLC using 3D-QSAR, molecular docking, MOLCAD and MM …

O Daoui, S Elkhattabi, S Chtita - Letters in Drug Design & …, 2023 - ingentaconnect.com
Introduction: In this work, we used several molecular modeling techniques to design new
molecules for the treatment of non-small cell lung cancer (NSCLC). Methods: For this …

Benchmark of four popular virtual screening programs: construction of the active/decoy dataset remains a major determinant of measured performance

L Chaput, J Martinez-Sanz, N Saettel… - Journal of …, 2016 - Springer
Background In a structure-based virtual screening, the choice of the docking program is
essential for the success of a hit identification. Benchmarks are meant to help in guiding this …