A review of machine learning-based methods for predicting drug–target interactions

W Shi, H Yang, L Xie, XX Yin, Y Zhang - Health Information Science and …, 2024 - Springer
The prediction of drug–target interactions (DTI) is a crucial preliminary stage in drug
discovery and development, given the substantial risk of failure and the prolonged validation …

GPCNDTA: prediction of drug-target binding affinity through cross-attention networks augmented with graph features and pharmacophores

L Zhang, CC Wang, Y Zhang, X Chen - Computers in Biology and Medicine, 2023 - Elsevier
Drug-target affinity prediction is a challenging task in drug discovery. The latest
computational models have limitations in mining edge information in molecule graphs …

PMF-CPI: assessing drug selectivity with a pretrained multi-functional model for compound–protein interactions

N Song, R Dong, Y Pu, E Wang, J Xu, F Guo - Journal of Cheminformatics, 2023 - Springer
Compound–protein interactions (CPI) play significant roles in drug development. To avoid
side effects, it is also crucial to evaluate drug selectivity when binding to different targets …

DataDTA: a multi-feature and dual-interaction aggregation framework for drug–target binding affinity prediction

Y Zhu, L Zhao, N Wen, J Wang, C Wang - Bioinformatics, 2023 - academic.oup.com
Motivation Accurate prediction of drug–target binding affinity (DTA) is crucial for drug
discovery. The increase in the publication of large-scale DTA datasets enables the …

Prediction of Drug-Target Binding Affinity Based on Deep Learning Models

H Zhang, X Liu, W Cheng, T Wang, Y Chen - Computers in Biology and …, 2024 - Elsevier
The prediction of drug-target binding affinity (DTA) plays an important role in drug discovery.
Computerized virtual screening techniques have been used for DTA prediction, greatly …

Multi-perspective neural network for dual drug repurposing in Alzheimer's disease

L Zhao, Z Li, G Chen, Y Yin, CYC Chen - Knowledge-Based Systems, 2024 - Elsevier
In the field of drug discovery, the large-scale prediction of drug-target affinity (DTA) is
essential. Despite recent advancements in deep learning enhancing DTA prediction, many …

Triple Generative Self-Supervised Learning Method for Molecular Property Prediction

L Xu, L Xia, S Pan, Z Li - International Journal of Molecular Sciences, 2024 - mdpi.com
Molecular property prediction is an important task in drug discovery, and with help of self-
supervised learning methods, the performance of molecular property prediction could be …

A Biological Feature and Heterogeneous Network Representation Learning-Based Framework for Drug–Target Interaction Prediction

L Liu, Q Zhang, Y Wei, Q Zhao, B Liao - Molecules, 2023 - mdpi.com
The prediction of drug–target interaction (DTI) is crucial to drug discovery. Although the
interactions between the drug and target can be accurately verified by traditional …

MMDG-DTI: Drug–target interaction prediction via multimodal feature fusion and domain generalization

Y Hua, Z Feng, X Song, XJ Wu, J Kittler - Pattern Recognition, 2025 - Elsevier
Recently, deep learning has become the essential methodology for Drug–Target Interaction
(DTI) prediction. However, the existing learning-based representation methods embed the …

GraphCL-DTA: a graph contrastive learning with molecular semantics for drug-target binding affinity prediction

X Yang, G Yang, J Chu - IEEE Journal of Biomedical and …, 2024 - ieeexplore.ieee.org
Drug-target binding affinity prediction plays an important role in the early stages of drug
discovery, which can infer the strength of interactions between new drugs and new targets …