Measuring biological age using omics data
Age is the key risk factor for diseases and disabilities of the elderly. Efforts to tackle age-
related diseases and increase healthspan have suggested targeting the ageing process …
related diseases and increase healthspan have suggested targeting the ageing process …
[HTML][HTML] Unbiased spatial proteomics with single-cell resolution in tissues
Mass spectrometry (MS)-based proteomics has become a powerful technology to quantify
the entire complement of proteins in cells or tissues. Here, we review challenges and recent …
the entire complement of proteins in cells or tissues. Here, we review challenges and recent …
TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples
J Li, JG Van Vranken, L Pontano Vaites… - Nature …, 2020 - nature.com
Isobaric labeling empowers proteome-wide expression measurements simultaneously
across multiple samples. Here an expanded set of 16 isobaric reagents based on an …
across multiple samples. Here an expanded set of 16 isobaric reagents based on an …
[HTML][HTML] Quantitative mass spectrometry-based proteomics: an overview
S Rozanova, K Barkovits, M Nikolov, C Schmidt… - Quantitative methods in …, 2021 - Springer
In recent decades, mass spectrometry has moved more than ever before into the front line of
protein-centered research. After being established at the qualitative level, the more …
protein-centered research. After being established at the qualitative level, the more …
[HTML][HTML] Proteomic analysis of archival breast cancer clinical specimens identifies biological subtypes with distinct survival outcomes
Despite advances in genomic classification of breast cancer, current clinical tests and
treatment decisions are commonly based on protein level information. Formalin-fixed …
treatment decisions are commonly based on protein level information. Formalin-fixed …
[HTML][HTML] A pragmatic guide to enrichment strategies for mass spectrometry–based glycoproteomics
Glycosylation is a prevalent, yet heterogeneous modification with a broad range of
implications in molecular biology. This heterogeneity precludes enrichment strategies that …
implications in molecular biology. This heterogeneity precludes enrichment strategies that …
[HTML][HTML] Bioinformatics methods for mass spectrometry-based proteomics data analysis
Recent advances in mass spectrometry (MS)-based proteomics have enabled tremendous
progress in the understanding of cellular mechanisms, disease progression, and the …
progress in the understanding of cellular mechanisms, disease progression, and the …
Labeling preferences of diazirines with protein biomolecules
AV West, G Muncipinto, HY Wu, AC Huang… - Journal of the …, 2021 - ACS Publications
Diazirines are widely used in photoaffinity labeling (PAL) to trap noncovalent interactions
with biomolecules. However, design and interpretation of PAL experiments is challenging …
with biomolecules. However, design and interpretation of PAL experiments is challenging …
Analytical and biochemical perspectives of protein O-GlcNAcylation
Protein O-linked β-N-acetylglucosamine (O-GlcNAc) modification (O-GlcNAcylation) is a
unique monosaccharide modification discovered in the early 1980s. With the technological …
unique monosaccharide modification discovered in the early 1980s. With the technological …
[HTML][HTML] Cell type-specific biotin labeling in vivo resolves regional neuronal and astrocyte proteomic differences in mouse brain
S Rayaprolu, S Bitarafan, JV Santiago… - Nature …, 2022 - nature.com
Proteomic profiling of brain cell types using isolation-based strategies pose limitations in
resolving cellular phenotypes representative of their native state. We describe a mouse line …
resolving cellular phenotypes representative of their native state. We describe a mouse line …