The relationship between genome structure and function
AM Oudelaar, DR Higgs - Nature Reviews Genetics, 2021 - nature.com
Precise patterns of gene expression in metazoans are controlled by three classes of
regulatory elements: promoters, enhancers and boundary elements. During differentiation …
regulatory elements: promoters, enhancers and boundary elements. During differentiation …
Determining chromatin architecture with Micro Capture-C
Abstract Micro Capture-C (MCC) is a chromatin conformation capture (3C) method for
visualizing reproducible three-dimensional contacts of specified regions of the genome at …
visualizing reproducible three-dimensional contacts of specified regions of the genome at …
Region Capture Micro-C reveals coalescence of enhancers and promoters into nested microcompartments
Although enhancers are central regulators of mammalian gene expression, the mechanisms
underlying enhancer–promoter (EP) interactions remain unclear. Chromosome …
underlying enhancer–promoter (EP) interactions remain unclear. Chromosome …
Linking genome structures to functions by simultaneous single-cell Hi-C and RNA-seq
Z Liu, Y Chen, Q Xia, M Liu, H Xu, Y Chi, Y Deng… - Science, 2023 - science.org
Much progress has been made recently in single-cell chromosome conformation capture
technologies. However, a method that allows simultaneous profiling of chromatin …
technologies. However, a method that allows simultaneous profiling of chromatin …
Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
The relationship between chromatin organization and gene regulation remains unclear.
While disruption of chromatin domains and domain boundaries can lead to misexpression of …
While disruption of chromatin domains and domain boundaries can lead to misexpression of …
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
A Aljahani, P Hua, MA Karpinska, K Quililan… - Nature …, 2022 - nature.com
Enhancers and promoters predominantly interact within large-scale topologically
associating domains (TADs), which are formed by loop extrusion mediated by cohesin and …
associating domains (TADs), which are formed by loop extrusion mediated by cohesin and …
[HTML][HTML] Super-enhancers include classical enhancers and facilitators to fully activate gene expression
JW Blayney, H Francis, A Rampasekova, B Camellato… - Cell, 2023 - cell.com
Super-enhancers are compound regulatory elements that control expression of key cell
identity genes. They recruit high levels of tissue-specific transcription factors and co …
identity genes. They recruit high levels of tissue-specific transcription factors and co …
The Mediator complex regulates enhancer-promoter interactions
S Ramasamy, A Aljahani, MA Karpinska… - Nature Structural & …, 2023 - nature.com
Enhancer-mediated gene activation generally requires physical proximity between
enhancers and their target gene promoters. However, the molecular mechanisms by which …
enhancers and their target gene promoters. However, the molecular mechanisms by which …
BET inhibition disrupts transcription but retains enhancer-promoter contact
NT Crump, E Ballabio, L Godfrey, R Thorne… - Nature …, 2021 - nature.com
Enhancers are DNA sequences that enable complex temporal and tissue-specific regulation
of genes in higher eukaryotes. Although it is not entirely clear how enhancer-promoter …
of genes in higher eukaryotes. Although it is not entirely clear how enhancer-promoter …
Transcription factor competition at the γ-globin promoters controls hemoglobin switching
BCL11A, the major regulator of fetal hemoglobin (HbF, α2γ2) level, represses γ-globin
expression through direct promoter binding in adult erythroid cells in a switch to adult …
expression through direct promoter binding in adult erythroid cells in a switch to adult …