Complex genome assembly based on long-read sequencing
T Zhang, J Zhou, W Gao, Y Jia, Y Wei… - Briefings in …, 2022 - academic.oup.com
High-quality genome chromosome-scale sequences provide an important basis for
genomics downstream analysis, especially the construction of haplotype-resolved and …
genomics downstream analysis, especially the construction of haplotype-resolved and …
Recent Advances in Assembly of Complex Plant Genomes
W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …
computational algorithms have spurred plant genomic research into a thriving era with …
Telomere-to-telomere and gap-free reference genome assembly of the kiwifruit Actinidia chinensis
J Yue, Q Chen, Y Wang, L Zhang, C Ye… - Horticulture …, 2023 - academic.oup.com
Kiwifruit is an economically and nutritionally important fruit crop with extremely high contents
of vitamin C. However, the previously released versions of kiwifruit genomes all have a mass …
of vitamin C. However, the previously released versions of kiwifruit genomes all have a mass …
Gene mining and genomics-assisted breeding empowered by the pangenome of tea plant Camellia sinensis
S Chen, P Wang, W Kong, K Chai, S Zhang, J Yu… - Nature plants, 2023 - nature.com
Tea is one of the world's oldest crops and is cultivated to produce beverages with various
flavours. Despite advances in sequencing technologies, the genetic mechanisms underlying …
flavours. Despite advances in sequencing technologies, the genetic mechanisms underlying …
Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield
B Liao, X Shen, L Xiang, S Guo, S Chen, Y Meng… - Molecular plant, 2022 - cell.com
Artemisia annua is the major natural source of artemisinin, an anti-malarial medicine
commonly used worldwide. Here, we present chromosome-level haploid maps for two A …
commonly used worldwide. Here, we present chromosome-level haploid maps for two A …
Identification of errors in draft genome assemblies at single-nucleotide resolution for quality assessment and improvement
K Li, P Xu, J Wang, X Yi, Y Jiao - Nature Communications, 2023 - nature.com
Assembly of a high-quality genome is important for downstream comparative and functional
genomic studies. However, most tools for genome assembly assessment only give …
genomic studies. However, most tools for genome assembly assessment only give …
Characterization of two O-methyltransferases involved in the biosynthesis of O-methylated catechins in tea plant
JQ Jin, FR Qu, H Huang, QS Liu, MY Wei… - Nature …, 2023 - nature.com
Tea is known for having a high catechin content, with the main component being (−)-
epigallocatechin gallate (EGCG), which has significant bioactivities, including potential anti …
epigallocatechin gallate (EGCG), which has significant bioactivities, including potential anti …
TPIA2: an updated tea plant information archive for Camellia genomics
Q Gao, W Tong, F Li, Y Wang, Q Wu… - Nucleic Acids …, 2024 - academic.oup.com
The genus Camellia consists of about 200 species, which include many economically
important species widely used for making tea, ornamental flowers and edible oil. Here, we …
important species widely used for making tea, ornamental flowers and edible oil. Here, we …
A haplotype-resolved genome assembly of Rhododendron vialii based on PacBio HiFi reads and Hi-C data
Y Chang, R Zhang, Y Ma, W Sun - Scientific Data, 2023 - nature.com
Rhododendron vialii (subgen. Azaleastrum) is an evergreen shrub with high ornamental
value. This species has been listed as a plant species with extremely small populations …
value. This species has been listed as a plant species with extremely small populations …
A genome variation map provides insights into the genetics of walnut adaptation and agronomic traits
Abstract Background Common walnut (Juglans regia L.) is one of the top four most
consumed nuts in the world due to its health benefits and pleasant taste. Despite its …
consumed nuts in the world due to its health benefits and pleasant taste. Despite its …