Structural diversity among plastid genomes of land plants

JP Mower, TL Vickrey - Advances in botanical research, 2018 - Elsevier
The plastome of land plants is often considered to be highly conserved in sequence,
structure, and content. This is particularly true for nonvascular land plants, for which few …

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

PP Edger, R VanBuren, M Colle, TJ Poorten… - …, 2018 - academic.oup.com
Background Although draft genomes are available for most agronomically important plant
species, the majority are incomplete, highly fragmented, and often riddled with assembly …

High-throughput sequencing for algal systematics

MC Oliveira, SI Repetti, C Iha, CJ Jackson… - European Journal of …, 2018 - Taylor & Francis
In recent years, the use of molecular data in algal systematics has increased as high-
throughput sequencing (HTS) has become more accessible, generating very large datasets …

An open and continuously updated fern tree of life

JH Nitta, E Schuettpelz, S Ramírez-Barahona… - Frontiers in Plant …, 2022 - frontiersin.org
Ferns, with about 12,000 species, are the second most diverse lineage of vascular plants
after angiosperms. They have been the subject of numerous molecular phylogenetic studies …

Large-scale phylogenomic analysis resolves a backbone phylogeny in ferns

H Shen, D Jin, JP Shu, XL Zhou, M Lei, R Wei… - …, 2018 - academic.oup.com
Background Ferns, originated about 360 million years ago, are the sister group of seed
plants. Despite the remarkable progress in our understanding of fern phylogeny, with …

Simultaneous diversification of Polypodiales and angiosperms in the Mesozoic

XY Du, JM Lu, LB Zhang, J Wen, LY Kuo… - …, 2021 - Wiley Online Library
Comprising about 82% of the extant fern species diversity, Polypodiales are generally
believed to have diversified in the Late Cretaceous. We estimated the divergence times of …

A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families

X Qi, LY Kuo, C Guo, H Li, Z Li, JI Qi, L Wang… - Molecular Phylogenetics …, 2018 - Elsevier
Ferns account for 80% of nonflowering vascular plant species and are the sister lineage of
seed plants. Recent molecular phylogenetics have greatly advanced understanding of fern …

Tree of life for the genera of Chinese vascular plants

ZD Chen, T Yang, L Lin, LM Lu, HL Li… - … of Systematics and …, 2016 - Wiley Online Library
We reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using
sequences of the chloroplast genes atpB, matK, ndhF, and rbcL and mitochondrial matR. We …

Plastid phylogenomics resolve deep relationships among eupolypod II ferns with rapid radiation and rate heterogeneity

R Wei, YH Yan, AJ Harris, JS Kang… - Genome Biology and …, 2017 - academic.oup.com
The eupolypods II ferns represent a classic case of evolutionary radiation and,
simultaneously, exhibit high substitution rate heterogeneity. These factors have been …

The Compositae tree of life in the age of phylogenomics

JR Mandel, MS Barker, RJ Bayer… - … of Systematics and …, 2017 - Wiley Online Library
Comprising more than 25 000 species, the Sunflower Family (Compositae or Asteraceae) is
the largest family of flowering plants. Many of its lineages have experienced recent and …