A guide to metabolic flux analysis in metabolic engineering: Methods, tools and applications
MR Antoniewicz - Metabolic engineering, 2021 - Elsevier
The field of metabolic engineering is primarily concerned with improving the biological
production of value-added chemicals, fuels and pharmaceuticals through the design …
production of value-added chemicals, fuels and pharmaceuticals through the design …
[HTML][HTML] Modelling cell metabolism: a review on constraint-based steady-state and kinetic approaches
M Yasemi, M Jolicoeur - Processes, 2021 - mdpi.com
Studying cell metabolism serves a plethora of objectives such as the enhancement of
bioprocess performance, and advancement in the understanding of cell biology, of drug …
bioprocess performance, and advancement in the understanding of cell biology, of drug …
[HTML][HTML] Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
Through advanced mechanistic modeling and the generation of large high-quality datasets,
machine learning is becoming an integral part of understanding and engineering living …
machine learning is becoming an integral part of understanding and engineering living …
A guide to deciphering microbial interactions and metabolic fluxes in microbiome communities
MR Antoniewicz - Current opinion in biotechnology, 2020 - Elsevier
Highlights•New predictive modeling approaches and better tools to manipulate microbiome
interactions are needed.•Identifying and validating cross–feeding interactions in microbial …
interactions are needed.•Identifying and validating cross–feeding interactions in microbial …
Building kinetic models for metabolic engineering
Highlights•Kinetic models integrate heterogeneous data to give metabolic engineering
insights.•Need accurate catalytic and allostery kinetic parameters for quality kinetic …
insights.•Need accurate catalytic and allostery kinetic parameters for quality kinetic …
[HTML][HTML] Control and regulation of acetate overflow in Escherichia coli
Overflow metabolism refers to the production of seemingly wasteful by-products by cells
during growth on glucose even when oxygen is abundant. Two theories have been …
during growth on glucose even when oxygen is abundant. Two theories have been …
[HTML][HTML] Optimization and scale-up of fermentation processes driven by models
YH Du, MY Wang, LH Yang, LL Tong, DS Guo, XJ Ji - Bioengineering, 2022 - mdpi.com
In the era of sustainable development, the use of cell factories to produce various
compounds by fermentation has attracted extensive attention; however, industrial …
compounds by fermentation has attracted extensive attention; however, industrial …
[HTML][HTML] Extensive regulation of enzyme activity by phosphorylation in Escherichia coli
E Schastnaya, Z Raguz Nakic, CH Gruber… - Nature …, 2021 - nature.com
Protein serine/threonine/tyrosine (S/T/Y) phosphorylation is an essential and frequent post-
translational modification in eukaryotes, but historically has been considered less prevalent …
translational modification in eukaryotes, but historically has been considered less prevalent …
[HTML][HTML] Metabolic flux analysis: a comprehensive review on sample preparation, analytical techniques, data analysis, computational modelling, and main application …
Metabolic flux analysis (MFA) quantitatively describes cellular fluxes to understand
metabolic phenotypes and functional behaviour after environmental and/or genetic …
metabolic phenotypes and functional behaviour after environmental and/or genetic …
Advances and prospects in metabolic engineering of Escherichia coli for L-tryptophan production
S Liu, JZ Xu, WG Zhang - World Journal of Microbiology and …, 2022 - Springer
As an important raw material for pharmaceutical, food and feed industry, highly efficient
production of L-tryptophan by Escherichia coli has attracted a considerable attention …
production of L-tryptophan by Escherichia coli has attracted a considerable attention …