Key topics in molecular docking for drug design
PHM Torres, ACR Sodero, P Jofily… - International journal of …, 2019 - mdpi.com
Molecular docking has been widely employed as a fast and inexpensive technique in the
past decades, both in academic and industrial settings. Although this discipline has now had …
past decades, both in academic and industrial settings. Although this discipline has now had …
[HTML][HTML] Empirical scoring functions for structure-based virtual screening: applications, critical aspects, and challenges
IA Guedes, FSS Pereira, LE Dardenne - Frontiers in pharmacology, 2018 - frontiersin.org
Structure-based virtual screening (VS) is a widely used approach that employs the
knowledge of the three-dimensional structure of the target of interest in the design of new …
knowledge of the three-dimensional structure of the target of interest in the design of new …
New machine learning and physics-based scoring functions for drug discovery
Scoring functions are essential for modern in silico drug discovery. However, the accurate
prediction of binding affinity by scoring functions remains a challenging task. The …
prediction of binding affinity by scoring functions remains a challenging task. The …
Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace
N Singh, L Chaput, BO Villoutreix - Briefings in bioinformatics, 2021 - academic.oup.com
The interplay between life sciences and advancing technology drives a continuous cycle of
chemical data growth; these data are most often stored in open or partially open databases …
chemical data growth; these data are most often stored in open or partially open databases …
[HTML][HTML] Molecular docking: current advances and challenges
FD Prieto-Martínez, M Arciniega… - … en ciencias químico …, 2018 - scielo.org.mx
Automated molecular docking aims at predicting the possible interactions between two
molecules. This method has proven useful in medicinal chemistry and drug discovery …
molecules. This method has proven useful in medicinal chemistry and drug discovery …
[HTML][HTML] Acoplamiento molecular: avances recientes y retos
FD Prieto-Martínez, M Arciniega… - … en Ciencias Químico …, 2019 - medigraphic.com
El acoplamiento molecular automatizado tiene como objetivo proponer un modelo de unión
entre dos moléculas. Este método ha sido útil en química farmacéutica y en el …
entre dos moléculas. Este método ha sido útil en química farmacéutica y en el …
Multi-task bioassay pre-training for protein-ligand binding affinity prediction
Protein–ligand binding affinity (PLBA) prediction is the fundamental task in drug discovery.
Recently, various deep learning-based models predict binding affinity by incorporating the …
Recently, various deep learning-based models predict binding affinity by incorporating the …
Emerging frontiers in virtual drug discovery: From quantum mechanical methods to deep learning approaches
Virtual screening-based approaches to discover initial hit and lead compounds have the
potential to reduce both the cost and time of early drug discovery stages, as well as to find …
potential to reduce both the cost and time of early drug discovery stages, as well as to find …
Improving the binding affinity estimations of protein–ligand complexes using machine-learning facilitated force field method
Scoring functions are routinely deployed in structure-based drug design to quantify the
potential for protein–ligand (PL) complex formation. Here, we present a new scoring function …
potential for protein–ligand (PL) complex formation. Here, we present a new scoring function …
Recent advances in computer-aided structure-based drug design on ion channels
P Pliushcheuskaya, G Künze - International Journal of Molecular …, 2023 - mdpi.com
Ion channels play important roles in fundamental biological processes, such as electric
signaling in cells, muscle contraction, hormone secretion, and regulation of the immune …
signaling in cells, muscle contraction, hormone secretion, and regulation of the immune …