Museum genomics

DC Card, B Shapiro, G Giribet, C Moritz… - Annual Review of …, 2021 - annualreviews.org
Natural history collections are invaluable repositories of biological information that provide
an unrivaled record of Earth's biodiversity. Museum genomics—genomics research using …

Beyond predictions: biodiversity conservation in a changing climate

TP Dawson, ST Jackson, JI House, IC Prentice… - science, 2011 - science.org
Climate change is predicted to become a major threat to biodiversity in the 21st century, but
accurate predictions and effective solutions have proved difficult to formulate. Alarming …

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)

A Rambaut, TT Lam, L Max Carvalho… - Virus …, 2016 - academic.oup.com
Gene sequences sampled at different points in time can be used to infer molecular
phylogenies on a natural timescale of months or years, provided that the sequences in …

The configuration of Northern Hemisphere ice sheets through the Quaternary

CL Batchelor, M Margold, M Krapp, DK Murton… - Nature …, 2019 - nature.com
Our understanding of how global climatic changes are translated into ice-sheet fluctuations
and sea-level change is currently limited by a lack of knowledge of the configuration of ice …

[PDF][PDF] PHYLACINE 1.2: the phylogenetic atlas of mammal macroecology

S Faurby, M Davis, RØ Pedersen, SD Schowanek… - Ecology, 2018 - researchgate.net
Data needed for macroecological analyses are difficult to compile and often hidden away in
supplementary material under non-standardized formats. Phylogenies, range data, and trait …

The fossilized birth–death process for coherent calibration of divergence-time estimates

TA Heath, JP Huelsenbeck… - Proceedings of the …, 2014 - National Acad Sciences
Time-calibrated species phylogenies are critical for addressing a wide range of questions in
evolutionary biology, such as those that elucidate historical biogeography or uncover …

Approaching a state shift in Earth's biosphere

AD Barnosky, EA Hadly, J Bascompte, EL Berlow… - Nature, 2012 - nature.com
Localized ecological systems are known to shift abruptly and irreversibly from one state to
another when they are forced across critical thresholds. Here we review evidence that the …

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

MS Gill, P Lemey, NR Faria, A Rambaut… - Molecular biology …, 2013 - academic.oup.com
Effective population size is fundamental in population genetics and characterizes genetic
diversity. To infer past population dynamics from molecular sequence data, coalescent …

Refugia revisited: individualistic responses of species in space and time

JR Stewart, AM Lister, I Barnes… - Proceedings of the …, 2010 - royalsocietypublishing.org
Climate change in the past has led to significant changes in species' distributions. However,
how individual species respond to climate change depends largely on their adaptations and …

BEAST: Bayesian evolutionary analysis by sampling trees

AJ Drummond, A Rambaut - BMC evolutionary biology, 2007 - Springer
Background The evolutionary analysis of molecular sequence variation is a statistical
enterprise. This is reflected in the increased use of probabilistic models for phylogenetic …