Deep learning in image-based plant phenotyping

KM Murphy, E Ludwig, J Gutierrez… - Annual Review of Plant …, 2024 - annualreviews.org
A major bottleneck in the crop improvement pipeline is our ability to phenotype crops quickly
and efficiently. Image-based, high-throughput phenotyping has a number of advantages …

Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multienvironment trials

S Neupane, DM Wright, RO Martinez, J Butler… - The Plant …, 2023 - Wiley Online Library
Adaptation constraints within crop species have resulted in limited genetic diversity in some
breeding programs and areas where new crops have been introduced, for example, for lentil …

SG× P: a sorghum genotype× phenotype prediction dataset and benchmark

Z Zhang, R Pless, N Shakoor… - Advances in …, 2024 - proceedings.neurips.cc
Large scale field-phenotyping approaches have the potential to solve important questions
about the relationship of plant genotype to plant phenotype. Computational approaches to …

Yield prediction in a peanut breeding program using remote sensing data and machine learning algorithms

NA Pugh, A Young, M Ojha, Y Emendack… - Frontiers in Plant …, 2024 - frontiersin.org
Peanut is a critical food crop worldwide, and the development of high-throughput
phenotyping techniques is essential for enhancing the crop's genetic gain rate. Given the …

SpykProps: an imaging pipeline to quantify architecture in unilateral grass inflorescences

J Barreto Ortiz, CN Hirsch, NJ Ehlke, E Watkins - Plant Methods, 2023 - Springer
Background Inflorescence properties such length, spikelet number, and their spatial
distribution across the rachis, are fundamental indicators of seed productivity in grasses and …

Lincoln's Annotated Spatio-Temporal Strawberry Dataset (LAST-Straw)

KMF James, K Heiwolt, DJ Sargent… - arXiv preprint arXiv …, 2024 - arxiv.org
Automated phenotyping of plants for breeding and plant studies promises to provide
quantitative metrics on plant traits at a previously unattainable observation frequency …

Spatio-temporal modeling of high-throughput multispectral aerial images improves agronomic trait genomic prediction in hybrid maize

N Morales, MT Anche, NS Kaczmar, N Lepak, P Ni… - Genetics, 2024 - academic.oup.com
Abstract Design randomizations and spatial corrections have increased understanding of
genotypic, spatial, and residual effects in field experiments, but precisely measuring spatial …

High-throughput Phenotyping of Soybean Biomass: Conventional Trait Estimation and Novel Latent Feature Extraction Using UAV Remote Sensing and Deep …

M Okada, C Barras, Y Toda, K Hamazaki, Y Ohmori… - bioRxiv, 2024 - biorxiv.org
High throughput phenotyping serves as a framework to reduce chronological costs and
accelerate breeding cycles. In this study, we developed models to estimate the phenotypes …

Uncovering hidden phenotypes to accelerate domestication in perennial Ryegrass for seed production

J Barreto Ortiz - 2022 - conservancy.umn.edu
Seed dispersion, shattering, shedding, and lack of retention, all refer to the same dispersal
mechanism in which reproductive organs detach from plant inflorescences upon maturity …

[图书][B] Deep Learning for Large Scale Plant Phenotyping

Z Zhang - 2024 - search.proquest.com
Crop breeding needs phenotyping to assess the physical and biochemical characteristics of
plants and identify desirable traits for selection. Traditional techniques for evaluating plant …