VolcanoFinder: genomic scans for adaptive introgression

D Setter, S Mousset, X Cheng, R Nielsen… - PLoS …, 2020 - journals.plos.org
Recent research shows that introgression between closely-related species is an important
source of adaptive alleles for a wide range of taxa. Typically, detection of adaptive …

[PDF][PDF] Genomics of plant speciation

DG Bock, Z Cai, C Elphinstone… - Plant …, 2023 - cell.com
Studies of plants have been instrumental for revealing how new species originate. For
several decades, botanical research has complemented and, in some cases, challenged …

Inferring balancing selection from genome-scale data

BD Bitarello, DYC Brandt, D Meyer… - Genome biology and …, 2023 - academic.oup.com
The identification of genomic regions and genes that have evolved under natural selection is
a fundamental objective in the field of evolutionary genetics. While various approaches have …

Searching for sympatric speciation in the genomic era

EJ Richards, MR Servedio, CH Martin - BioEssays, 2019 - Wiley Online Library
Sympatric speciation illustrates how natural and sexual selection may create new species in
isolation without geographic barriers. However, recent genomic reanalyses of classic …

Population genomics of herbicide resistance: adaptation via evolutionary rescue

JM Kreiner, JR Stinchcombe… - Annual review of plant …, 2018 - annualreviews.org
The evolution of herbicide resistance in weed populations is a highly replicated example of
adaptation surmounting the race against extinction, but the factors determining its rate and …

ADH1B: From alcoholism, natural selection, and cancer to the human phenome

R Polimanti, J Gelernter - … Journal of Medical Genetics Part B …, 2018 - Wiley Online Library
The ADH1B (Alcohol Dehydrogenase 1B (class I), Beta Polypeptide) gene and its best‐
known functional alleles, Arg48His (rs1229984, ADH1B* 2) and Arg370Cys (rs2066702 …

The contribution of genetic and genomic approaches to plant domestication studies

P Gepts - Current opinion in plant biology, 2014 - Elsevier
Highlights•Progress in genomics has greatly impacted research approaches in crop
evolution.•There is a more detailed view of the effect of domestication on genetic diversity …

Exploring signatures of positive selection in pigmentation candidate genes in populations of East Asian ancestry

JL Hider, RM Gittelman, T Shah, M Edwards… - BMC evolutionary …, 2013 - Springer
Background Currently, there is very limited knowledge about the genes involved in normal
pigmentation variation in East Asian populations. We carried out a genome-wide scan of …

Estimating selection coefficients in spatially structured populations from time series data of allele frequencies

I Mathieson, G McVean - Genetics, 2013 - academic.oup.com
Inferring the nature and magnitude of selection is an important problem in many biological
contexts. Typically when estimating a selection coefficient for an allele, it is assumed that …

Soft shoulders ahead: spurious signatures of soft and partial selective sweeps result from linked hard sweeps

DR Schrider, FK Mendes, MW Hahn, AD Kern - Genetics, 2015 - academic.oup.com
Characterizing the nature of the adaptive process at the genetic level is a central goal for
population genetics. In particular, we know little about the sources of adaptive substitution or …