Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications

BP Tracy, SW Jones, AG Fast, DC Indurthi… - Current opinion in …, 2012 - Elsevier
Clostridia are anaerobic Firmicutes producing a large array of metabolites by utilizing simple
and complex carbohydrates, such as cellulose, as well as CO2/H2 or CO. Their exceptional …

Mobile group II introns

AM Lambowitz, S Zimmerly - Annu. Rev. Genet., 2004 - annualreviews.org
▪ Abstract Mobile group II introns, found in bacterial and organellar genomes, are both
catalytic RNAs and retrotransposable elements. They use an extraordinary mobility …

Genetic manipulation of gut microbes enables single-gene interrogation in a complex microbiome

WB Jin, TT Li, D Huo, S Qu, XV Li, M Arifuzzaman… - Cell, 2022 - cell.com
Hundreds of microbiota genes are associated with host biology/disease. Unraveling the
causal contribution of a microbiota gene to host biology remains difficult because many are …

[图书][B] Evolution: a view from the 21st century

JA Shapiro - 2011 - books.google.com
James A. Shapiro proposes an important new paradigm for understanding biological
evolution, the core organizing principle of biology. Shapiro introduces crucial new molecular …

Efficient genome editing in Clostridium cellulolyticum via CRISPR-Cas9 nickase

T Xu, Y Li, Z Shi, CL Hemme, Y Li, Y Zhu… - Applied and …, 2015 - Am Soc Microbiol
The CRISPR-Cas9 system is a powerful and revolutionary genome-editing tool for
eukaryotic genomes, but its use in bacterial genomes is very limited. Here, we investigated …

The ClosTron: a universal gene knock-out system for the genus Clostridium

JT Heap, OJ Pennington, ST Cartman, GP Carter… - Journal of …, 2007 - Elsevier
Progress in exploiting clostridial genome information has been severely impeded by a
general lack of effective methods for the directed inactivation of specific genes. Those few …

Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage

ZX Liu, S Zhang, HZ Zhu, ZH Chen, Y Yang, LQ Li… - Science, 2024 - science.org
Ribozymes are catalytic RNAs with diverse functions including self-splicing and
polymerization. This work aims to discover natural ribozymes that behave as hydrolytic and …

Bile Acid Recognition by the Clostridium difficile Germinant Receptor, CspC, Is Important for Establishing Infection

MB Francis, CA Allen, R Shrestha, JA Sorg - PLoS pathogens, 2013 - journals.plos.org
Clostridium difficile spores must germinate in vivo to become actively growing bacteria in
order to produce the toxins that are necessary for disease. C. difficile spores germinate in …

The ClosTron: mutagenesis in Clostridium refined and streamlined

JT Heap, SA Kuehne, M Ehsaan, ST Cartman… - Journal of …, 2010 - Elsevier
The recent development of the ClosTron Group II intron directed mutagenesis tool for
Clostridium has advanced genetics in this genus, and here we present several significant …

Membrane disruption by antimicrobial fatty acids releases low-molecular-weight proteins from Staphylococcus aureus

JB Parsons, J Yao, MW Frank, P Jackson… - Journal of …, 2012 - Am Soc Microbiol
The skin represents an important barrier for pathogens and is known to produce fatty acids
that are toxic toward Gram-positive bacteria. A screen of fatty acids as growth inhibitors of …