Ribosome biogenesis and function in development and disease
C Ni, M Buszczak - Development, 2023 - journals.biologists.com
Although differential transcription drives the development of multicellular organisms, the
ultimate readout of a protein-coding gene is ribosome-dependent mRNA translation …
ultimate readout of a protein-coding gene is ribosome-dependent mRNA translation …
A synthetic biology approach for vaccine candidate design against delta strain of SARS-CoV-2 revealed disruption of favored codon pair as a better strategy over …
The SARS-CoV-2 delta variant (B. 1.617. 2) appeared for the first time in December 2020
and later spread worldwide. Currently available vaccines are not so efficacious in curbing …
and later spread worldwide. Currently available vaccines are not so efficacious in curbing …
Using protein-per-mRNA differences among human tissues in codon optimization
Background Codon usage and nucleotide composition of coding sequences have profound
effects on protein expression. However, while it is recognized that different tissues have …
effects on protein expression. However, while it is recognized that different tissues have …
Human tissues exhibit diverse composition of translation machinery
AS Anisimova, NM Kolyupanova, NE Makarova… - International Journal of …, 2023 - mdpi.com
While protein synthesis is vital for the majority of cell types of the human body, diversely
differentiated cells require specific translation regulation. This suggests the specialization of …
differentiated cells require specific translation regulation. This suggests the specialization of …
Dicodon-based measures for modeling gene expression
Motivation Codon usage preference patterns have been associated with modulation of
translation efficiency, protein folding, and mRNA decay. However, new studies support that …
translation efficiency, protein folding, and mRNA decay. However, new studies support that …
Cellular energy regulates mRNA degradation in a codon-specific manner
P Tomaz da Silva, Y Zhang, E Theodorakis… - Molecular Systems …, 2024 - embopress.org
Codon optimality is a major determinant of mRNA translation and degradation rates.
However, whether and through which mechanisms its effects are regulated remains poorly …
However, whether and through which mechanisms its effects are regulated remains poorly …
An insight into codon pattern analysis of autophagy genes associated with virus infection
S Singhal, U Kumar, T Alqahtani… - Current …, 2023 - ingentaconnect.com
Introduction: Apoptosis and autophagy are the two fundamental processes involved in
maintaining homeostasis, and a common stimulus may initiate the processes. Autophagy …
maintaining homeostasis, and a common stimulus may initiate the processes. Autophagy …
Synonymous codon variant analysis for autophagic genes dysregulated in neurodegeneration
Neurodegenerative disorders are often a culmination of the accumulation of abnormally
folded proteins and defective organelles. Autophagy is a process of removing these …
folded proteins and defective organelles. Autophagy is a process of removing these …
[PDF][PDF] Synonymous codon usage regulates translation initiation
CL Barrington, G Galindo, AL Koch, ER Horton… - Cell reports, 2023 - cell.com
Nonoptimal synonymous codons repress gene expression, but the underlying mechanisms
are poorly understood. We and others have previously shown that nonoptimal codons slow …
are poorly understood. We and others have previously shown that nonoptimal codons slow …
[HTML][HTML] Monitoring integrated stress response in live Drosophila
PV Lidsky, J Yuan, KA Lashkevich, SE Dmitriev… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Cells exhibit stress responses to various environmental changes. Among these responses,
the integrated stress response (ISR) plays a pivotal role as a crucial stress signaling …
the integrated stress response (ISR) plays a pivotal role as a crucial stress signaling …