The colorectal cancer gut environment regulates activity of the microbiome and promotes the multidrug resistant phenotype of ESKAPE and other pathogens

MTF Lamaudière, R Arasaradnam, GD Weedall… - Msphere, 2023 - Am Soc Microbiol
Taxonomic composition of the gut microbiota in colorectal cancer (CRC) patients is altered,
a newly recognized driving force behind the disease, the activity of which has been …

Rapid fluoroquinolone resistance detection in Pseudomonas aeruginosa using mismatch amplification mutation assay-based real-time PCR

DE Madden, KL McCarthy, SC Bell… - Journal of Medical …, 2022 - microbiologyresearch.org
Background. Antimicrobial resistance (AMR) is an ever-increasing global health concern.
One crucial facet in tackling the AMR epidemic is earlier and more accurate AMR diagnosis …

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

TJ Davies, J Swann, AE Sheppard… - Microbial …, 2023 - microbiologyresearch.org
Several bioinformatics genotyping algorithms are now commonly used to characterize
antimicrobial resistance (AMR) gene profiles in whole-genome sequencing (WGS) data, with …