GGC repeat expansion and exon 1 methylation of XYLT1 is a common pathogenic variant in Baratela-Scott syndrome
AJ LaCroix, D Stabley, R Sahraoui, MP Adam… - The American Journal of …, 2019 - cell.com
Baratela-Scott syndrome (BSS) is a rare, autosomal-recessive disorder characterized by
short stature, facial dysmorphisms, developmental delay, and skeletal dysplasia caused by …
short stature, facial dysmorphisms, developmental delay, and skeletal dysplasia caused by …
Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences
Tandem repeat (TR) expansion is the underlying cause of over 40 neurological disorders.
Long-read sequencing offers an exciting avenue over conventional technologies for …
Long-read sequencing offers an exciting avenue over conventional technologies for …
Polymorphic short tandem repeats make widespread contributions to blood and serum traits
J Margoliash, S Fuchs, Y Li, X Zhang, A Massarat… - Cell Genomics, 2023 - cell.com
Short tandem repeats (STRs) are genomic regions consisting of repeated sequences of 1–6
bp in succession. Single-nucleotide polymorphism (SNP)-based genome-wide association …
bp in succession. Single-nucleotide polymorphism (SNP)-based genome-wide association …
A diagnostic ceiling for exome sequencing in cerebellar ataxia and related neurological disorders
Genetic ataxias are associated with mutations in hundreds of genes with high phenotypic
overlap complicating the clinical diagnosis. Whole‐exome sequencing (WES) has increased …
overlap complicating the clinical diagnosis. Whole‐exome sequencing (WES) has increased …
Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data
RM Tankard, MF Bennett, P Degorski… - The American Journal of …, 2018 - cell.com
Repeat expansions cause more than 30 inherited disorders, predominantly neurogenetic.
These can present with overlapping clinical phenotypes, making molecular diagnosis …
These can present with overlapping clinical phenotypes, making molecular diagnosis …
CYLD is a causative gene for frontotemporal dementia – amyotrophic lateral sclerosis
C Dobson-Stone, M Hallupp, H Shahheydari… - Brain, 2020 - academic.oup.com
Frontotemporal dementia and amyotrophic lateral sclerosis are clinically and pathologically
overlapping disorders with shared genetic causes. We previously identified a disease locus …
overlapping disorders with shared genetic causes. We previously identified a disease locus …
Genome-wide evaluation of the effect of short tandem repeat variation on local DNA methylation
Short tandem repeats (STRs) contribute significantly to genetic diversity in humans,
including disease-causing variation. Although the effect of STR variation on gene …
including disease-causing variation. Although the effect of STR variation on gene …
DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing
Despite recent improvements in basecalling accuracy, nanopore sequencing still has higher
error rates on short-tandem repeats (STRs). Instead of using basecalled reads, we …
error rates on short-tandem repeats (STRs). Instead of using basecalled reads, we …
Clinical sequencing: from raw data to diagnosis with lifetime value
SM Caspar, N Dubacher, AM Kopps… - Clinical …, 2018 - Wiley Online Library
High‐throughput sequencing (HTS) has revolutionized genetics by enabling the detection of
sequence variants at hitherto unprecedented large scale. Despite these advances, however …
sequence variants at hitherto unprecedented large scale. Despite these advances, however …
STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci
Expansions of short tandem repeats (STRs) cause many rare diseases. Expansion detection
is challenging with short-read DNA sequencing data since supporting reads are often …
is challenging with short-read DNA sequencing data since supporting reads are often …