GGC repeat expansion and exon 1 methylation of XYLT1 is a common pathogenic variant in Baratela-Scott syndrome

AJ LaCroix, D Stabley, R Sahraoui, MP Adam… - The American Journal of …, 2019 - cell.com
Baratela-Scott syndrome (BSS) is a rare, autosomal-recessive disorder characterized by
short stature, facial dysmorphisms, developmental delay, and skeletal dysplasia caused by …

Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences

R Chiu, IS Rajan-Babu, JM Friedman, I Birol - Genome Biology, 2021 - Springer
Tandem repeat (TR) expansion is the underlying cause of over 40 neurological disorders.
Long-read sequencing offers an exciting avenue over conventional technologies for …

Polymorphic short tandem repeats make widespread contributions to blood and serum traits

J Margoliash, S Fuchs, Y Li, X Zhang, A Massarat… - Cell Genomics, 2023 - cell.com
Short tandem repeats (STRs) are genomic regions consisting of repeated sequences of 1–6
bp in succession. Single-nucleotide polymorphism (SNP)-based genome-wide association …

A diagnostic ceiling for exome sequencing in cerebellar ataxia and related neurological disorders

KJ Ngo, JE Rexach, H Lee, LE Petty… - Human …, 2020 - Wiley Online Library
Genetic ataxias are associated with mutations in hundreds of genes with high phenotypic
overlap complicating the clinical diagnosis. Whole‐exome sequencing (WES) has increased …

Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data

RM Tankard, MF Bennett, P Degorski… - The American Journal of …, 2018 - cell.com
Repeat expansions cause more than 30 inherited disorders, predominantly neurogenetic.
These can present with overlapping clinical phenotypes, making molecular diagnosis …

CYLD is a causative gene for frontotemporal dementia – amyotrophic lateral sclerosis

C Dobson-Stone, M Hallupp, H Shahheydari… - Brain, 2020 - academic.oup.com
Frontotemporal dementia and amyotrophic lateral sclerosis are clinically and pathologically
overlapping disorders with shared genetic causes. We previously identified a disease locus …

Genome-wide evaluation of the effect of short tandem repeat variation on local DNA methylation

A Martin-Trujillo, P Garg, N Patel, B Jadhav… - Genome …, 2023 - genome.cshlp.org
Short tandem repeats (STRs) contribute significantly to genetic diversity in humans,
including disease-causing variation. Although the effect of STR variation on gene …

DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing

L Fang, Q Liu, AM Monteys, P Gonzalez-Alegre… - Genome biology, 2022 - Springer
Despite recent improvements in basecalling accuracy, nanopore sequencing still has higher
error rates on short-tandem repeats (STRs). Instead of using basecalled reads, we …

Clinical sequencing: from raw data to diagnosis with lifetime value

SM Caspar, N Dubacher, AM Kopps… - Clinical …, 2018 - Wiley Online Library
High‐throughput sequencing (HTS) has revolutionized genetics by enabling the detection of
sequence variants at hitherto unprecedented large scale. Despite these advances, however …

STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci

H Dashnow, BS Pedersen, L Hiatt, J Brown… - Genome Biology, 2022 - Springer
Expansions of short tandem repeats (STRs) cause many rare diseases. Expansion detection
is challenging with short-read DNA sequencing data since supporting reads are often …