Understanding 3D genome organization by multidisciplinary methods

I Jerkovic, G Cavalli - Nature Reviews Molecular Cell Biology, 2021 - nature.com
Understanding how chromatin is folded in the nucleus is fundamental to understanding its
function. Although 3D genome organization has been historically difficult to study owing to a …

Sequencing-based methods and resources to study antimicrobial resistance

M Boolchandani, AW D'Souza, G Dantas - Nature Reviews Genetics, 2019 - nature.com
Antimicrobial resistance extracts high morbidity, mortality and economic costs yearly by
rendering bacteria immune to antibiotics. Identifying and understanding antimicrobial …

Principles of genome folding into topologically associating domains

Q Szabo, F Bantignies, G Cavalli - Science advances, 2019 - science.org
Understanding the mechanisms that underlie chromosome folding within cell nuclei is
essential to determine the relationship between genome structure and function. The recent …

[HTML][HTML] Multiscale structuring of the E. coli chromosome by nucleoid-associated and condensin proteins

VS Lioy, A Cournac, M Marbouty, S Duigou… - Cell, 2018 - cell.com
As in eukaryotes, bacterial genomes are not randomly folded. Bacterial genetic information
is generally carried on a circular chromosome with a single origin of replication from which …

Engineered live bacteria suppress Pseudomonas aeruginosa infection in mouse lung and dissolve endotracheal-tube biofilms

R Mazzolini, I Rodríguez-Arce, L Fernández-Barat… - Nature …, 2023 - nature.com
Engineered live bacteria could provide a new modality for treating lung infections, a major
cause of mortality worldwide. In the present study, we engineered a genome-reduced …

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

G Nir, I Farabella, C Pérez Estrada, CG Ebeling… - PLoS …, 2018 - journals.plos.org
Chromosome organization is crucial for genome function. Here, we present a method for
visualizing chromosomal DNA at super-resolution and then integrating Hi-C data to produce …

Building structural models of a whole mycoplasma cell

M Maritan, L Autin, J Karr, MW Covert, AJ Olson… - Journal of molecular …, 2022 - Elsevier
Building structural models of entire cells has been a long-standing cross-discipline
challenge for the research community, as it requires an unprecedented level of integration …

Multiscale dynamic structuring of bacterial chromosomes

VS Lioy, I Junier, F Boccard - Annual review of microbiology, 2021 - annualreviews.org
Since the nucleoid was isolated from bacteria in the 1970s, two fundamental questions
emerged and are still in the spotlight: how bacteria organize their chromosomes to fit inside …

A chromosomal loop anchor mediates bacterial genome organization

G Dugar, A Hofmann, DW Heermann, LW Hamoen - Nature genetics, 2022 - nature.com
Nucleoprotein complexes play an integral role in genome organization of both eukaryotes
and prokaryotes. Apart from their role in locally structuring and compacting DNA, several …

Smchd1 regulates long-range chromatin interactions on the inactive X chromosome and at Hox clusters

N Jansz, A Keniry, M Trussart, H Bildsoe… - Nature structural & …, 2018 - nature.com
The regulation of higher-order chromatin structure is complex and dynamic, and a full
understanding of the suite of mechanisms governing this architecture is lacking. Here, we …