A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus

J Carbonell-Caballero, R Alonso… - Molecular biology …, 2015 - academic.oup.com
Citrus genus includes some of the most important cultivated fruit trees worldwide. Despite
being extensively studied because of its commercial relevance, the origin of cultivated citrus …

A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs

W Dong, H Liu, C Xu, Y Zuo, Z Chen, S Zhou - BMC genetics, 2014 - Springer
Background Universal conventional DNA barcodes will become more and more popular in
biological material identifications. However, in many cases such as processed medicines or …

Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences

DF Xie, JB Tan, Y Yu, LJ Gui, DM Su, SD Zhou… - Annals of …, 2020 - academic.oup.com
Abstract Background and Aims The genus Allium L., one of the largest monocotyledonous
genera and one that includes many economically important crops with nutritional and …

Complete chloroplast genome sequences of four Allium species: comparative and phylogenetic analyses

YM Huo, LM Gao, BJ Liu, YY Yang, SP Kong, YQ Sun… - Scientific reports, 2019 - nature.com
The genus Allium is one of the largest monocotyledonous genera, containing over 850
species, and most of these species are found in temperate climates of the Northern …

Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions and accelerated rate of evolution in clpP

DV Dugas, D Hernandez, EJM Koenen, E Schwarz… - Scientific reports, 2015 - nature.com
The Leguminosae has emerged as a model for studying angiosperm plastome evolution
because of its striking diversity of structural rearrangements and sequence variation …

[HTML][HTML] Completion of the chloroplast genomes of five Chinese Juglans and their contribution to chloroplast phylogeny

Y Hu, KE Woeste, P Zhao - Frontiers in Plant Science, 2017 - frontiersin.org
Juglans L.(walnuts and butternuts) is an economically and ecologically important genus in
the family Juglandaceae. All Juglans are important nut and timber trees. Juglans regia …

Plastid genome sequences of legumes reveal parallel inversions and multiple losses of rps16 in papilionoids

EN Schwarz, TA Ruhlman, JSM Sabir… - … of Systematics and …, 2015 - Wiley Online Library
To date, publicly available plastid genomes of legumes have for the most part been limited
to the subfamily Papilionoideae. Here we report 13 new plastid genomes of legumes …

Chloroplast Genome Analysis of Resurrection Tertiary Relict Haberlea rhodopensis Highlights Genes Important for Desiccation Stress Response

Z Ivanova, G Sablok, E Daskalova… - Frontiers in Plant …, 2017 - frontiersin.org
Haberlea rhodopensis is a paleolithic tertiary relict species, best known as a resurrection
plant with remarkable tolerance to desiccation. When exposed to severe drought stress, H …

Complete Chloroplast Genome of Medicinal Plant Lonicera japonica: Genome Rearrangement, Intron Gain and Loss, and Implications for Phylogenetic Studies

L He, J Qian, X Li, Z Sun, X Xu, S Chen - Molecules, 2017 - mdpi.com
The complete chloroplast (cp) genome of Lonicera japonica, a common ornamental and
medicinal plant in North America and East Asia, was sequenced and analyzed. The length …

The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng

Y Zhao, J Yin, H Guo, Y Zhang, W Xiao, C Sun… - Frontiers in plant …, 2015 - frontiersin.org
Panax ginseng CA Meyer (P. ginseng) is an important medicinal plant and is often used in
traditional Chinese medicine. With next generation sequencing (NGS) technology, we …