Effects of molecular crowding on the structures, interactions, and functions of nucleic acids

S Nakano, D Miyoshi, N Sugimoto - Chemical reviews, 2014 - ACS Publications
Nucleic acids are excellent at recognizing complementary sequences through the formation
of Watson− Crick base pairs. Since the base pairing enables the highly selective …

Transcription-coupled DNA repair: two decades of progress and surprises

PC Hanawalt, G Spivak - Nature reviews Molecular cell biology, 2008 - nature.com
Expressed genes are scanned by translocating RNA polymerases, which sensitively detect
DNA damage and initiate transcription-coupled repair (TCR), a subpathway of nucleotide …

Non-canonical DNA structures: Diversity and disease association

A Bansal, S Kaushik, S Kukreti - Frontiers in genetics, 2022 - frontiersin.org
A complete understanding of DNA double-helical structure discovered by James Watson
and Francis Crick in 1953, unveil the importance and significance of DNA. For the last seven …

Non-B DNA structure-induced genetic instability and evolution

J Zhao, A Bacolla, G Wang, KM Vasquez - Cellular and molecular life …, 2010 - Springer
Repetitive DNA motifs are abundant in the genomes of various species and have the
capacity to adopt non-canonical (ie, non-B) DNA structures. Several non-B DNA structures …

Conformational changes of non-B DNA

J Choi, T Majima - Chemical Society Reviews, 2011 - pubs.rsc.org
In contrast to B-DNA that has a right-handed double helical structure with Watson–Crick
base pairing under the ordinary physiological conditions, repetitive DNA sequences under …

DNA triple helices: biological consequences and therapeutic potential

A Jain, G Wang, KM Vasquez - Biochimie, 2008 - Elsevier
DNA structure is a critical element in determining its function. The DNA molecule is capable
of adopting a variety of non-canonical structures, including three-stranded (ie triplex) …

Predicting thermal adaptation by looking into populations' genomic past

AJ Cortés, F López-Hernández… - Frontiers in …, 2020 - frontiersin.org
Molecular evolution offers an insightful theory to interpret the genomic consequences of
thermal adaptation to previous events of climate change beyond range shifts. However …

Interactions of small molecules with DNA junctions

KT McQuaid, A Pipier, CJ Cardin… - Nucleic Acids …, 2022 - academic.oup.com
The four natural DNA bases (A, T, G and C) associate in base pairs (A= T and G≡ C),
allowing the attached DNA strands to assemble into the canonical double helix of DNA (or …

Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins

I Voineagu, V Narayanan… - Proceedings of the …, 2008 - National Acad Sciences
DNA inverted repeats (IRs) are hotspots of genomic instability in both prokaryotes and
eukaryotes. This feature is commonly attributed to their ability to fold into hairpin-or cruciform …

Non-B DNA conformations, mutagenesis and disease

RD Wells - Trends in biochemical sciences, 2007 - cell.com
Recent discoveries have revealed that simple repeating DNA sequences, which are known
to adopt non-B DNA conformations (such as triplexes, cruciforms, slipped structures, left …