Artificial intelligence for drug discovery: Resources, methods, and applications
W Chen, X Liu, S Zhang, S Chen - Molecular Therapy-Nucleic Acids, 2023 - cell.com
Conventional wet laboratory testing, validations, and synthetic procedures are costly and
time-consuming for drug discovery. Advancements in artificial intelligence (AI) techniques …
time-consuming for drug discovery. Advancements in artificial intelligence (AI) techniques …
Surveying over 100 predictors of intrinsic disorder in proteins
Introduction Intrinsic disorder prediction field develops, assesses, and deploys
computational predictors of disorder in protein sequences and constructs and disseminates …
computational predictors of disorder in protein sequences and constructs and disseminates …
A large expert-curated cryo-EM image dataset for machine learning protein particle picking
Cryo-electron microscopy (cryo-EM) is a powerful technique for determining the structures of
biological macromolecular complexes. Picking single-protein particles from cryo-EM …
biological macromolecular complexes. Picking single-protein particles from cryo-EM …
[HTML][HTML] iTCep: a deep learning framework for identification of T cell epitopes by harnessing fusion features
Y Zhang, X Jian, L Xu, J Zhao, M Lu, Y Lin… - Frontiers in Genetics, 2023 - frontiersin.org
Neoantigens recognized by cytotoxic T cells are effective targets for tumor-specific immune
responses for personalized cancer immunotherapy. Quite a few neoantigen identification …
responses for personalized cancer immunotherapy. Quite a few neoantigen identification …
LMPhosSite: a deep learning-based approach for general protein phosphorylation site prediction using embeddings from the local window sequence and pretrained …
Phosphorylation is one of the most important post-translational modifications and plays a
pivotal role in various cellular processes. Although there exist several computational tools to …
pivotal role in various cellular processes. Although there exist several computational tools to …
[HTML][HTML] Current approaches to flexible loop modeling
Loops are key components of protein structures, involved in many biological functions. Due
to their conformational variability, the structural investigation of loops is a difficult topic …
to their conformational variability, the structural investigation of loops is a difficult topic …
In silico structural analysis exploring conformational folding of protein variants in Alzheimer's disease
E Efraimidis, MG Krokidis, TP Exarchos… - International Journal of …, 2023 - mdpi.com
Accurate protein structure prediction using computational methods remains a challenge in
molecular biology. Recent advances in AI-powered algorithms provide a transformative …
molecular biology. Recent advances in AI-powered algorithms provide a transformative …
[HTML][HTML] Deep learning approaches for conformational flexibility and switching properties in protein design
Following the hugely successful application of deep learning methods to protein structure
prediction, an increasing number of design methods seek to leverage generative models to …
prediction, an increasing number of design methods seek to leverage generative models to …
Revolutionizing biological science: The synergy of genomics in health, bioinformatics, agriculture, and artificial intelligence
A Biswas, A Kumari, DS Gaikwad… - OMICS: A Journal of …, 2023 - liebertpub.com
With climate emergency, COVID-19, and the rise of planetary health scholarship, the binary
of human and ecosystem health has been deeply challenged. The interdependence of …
of human and ecosystem health has been deeply challenged. The interdependence of …
[HTML][HTML] Protein subcellular localization prediction tools
M Gillani, G Pollastri - Computational and Structural Biotechnology Journal, 2024 - Elsevier
Protein subcellular localization prediction is of great significance in bioinformatics and
biological research. Most of the proteins do not have experimentally determined localization …
biological research. Most of the proteins do not have experimentally determined localization …