Machine learning in rare disease

J Banerjee, JN Taroni, RJ Allaway, DV Prasad… - Nature …, 2023 - nature.com
High-throughput profiling methods (such as genomics or imaging) have accelerated basic
research and made deep molecular characterization of patient samples routine. These …

Lead/drug discovery from natural resources

Z Xu, B Eichler, EA Klausner, J Duffy-Matzner, W Zheng - Molecules, 2022 - mdpi.com
Natural products and their derivatives have been shown to be effective drug candidates
against various diseases for many years. Over a long period of time, nature has produced an …

KG-Predict: A knowledge graph computational framework for drug repurposing

Z Gao, P Ding, R Xu - Journal of biomedical informatics, 2022 - Elsevier
The emergence of large-scale phenotypic, genetic, and other multi-model biochemical data
has offered unprecedented opportunities for drug discovery including drug repurposing …

Medical knowledge graph: Data sources, construction, reasoning, and applications

X Wu, J Duan, Y Pan, M Li - Big Data Mining and Analytics, 2023 - ieeexplore.ieee.org
Medical knowledge graphs (MKGs) are the basis for intelligent health care, and they have
been in use in a variety of intelligent medical applications. Thus, understanding the research …

[HTML][HTML] BERT based clinical knowledge extraction for biomedical knowledge graph construction and analysis

A Harnoune, M Rhanoui, M Mikram, S Yousfi… - Computer Methods and …, 2021 - Elsevier
Background: Knowledge is evolving over time, often as a result of new discoveries or
changes in the adopted methods of reasoning. Also, new facts or evidence may become …

Drug–disease association prediction with literature based multi-feature fusion

H Kang, L Hou, Y Gu, X Lu, J Li, Q Li - Frontiers in Pharmacology, 2023 - frontiersin.org
Introduction: Exploring the potential efficacy of a drug is a valid approach for drug
development with shorter development times and lower costs. Recently, several …

MRNDR: multihead attention-based recommendation network for drug repurposing

X Feng, Z Ma, C Yu, R Xin - Journal of Chemical Information and …, 2024 - ACS Publications
As is well-known, the process of developing new drugs is extremely expensive, whereas
drug repurposing represents a promising approach to augment the efficiency of new drug …

[HTML][HTML] IUPHAR review–Data-driven computational drug repurposing approaches for opioid use disorder

Z Gao, P Ding, R Xu - Pharmacological Research, 2024 - Elsevier
Abstract Opioid Use Disorder (OUD) is a chronic and relapsing condition characterized by
the misuse of opioid drugs, causing significant morbidity and mortality in the United States …

[HTML][HTML] A novel machine learning model based on sparse structure learning with adaptive graph regularization for predicting drug side effects

X Liang, J Li, Y Fu, L Qu, Y Tan, P Zhang - Journal of Biomedical Informatics, 2022 - Elsevier
Drug side effects are closely related to the success and failure of drug development. Here
we present a novel machine learning method for side effect prediction. The proposed …

[HTML][HTML] A knowledge graph-based disease-gene prediction system using multi-relational graph convolution networks

Z Gao, Y Pan, P Ding, R Xu - AMIA Annual Symposium …, 2022 - ncbi.nlm.nih.gov
Identifying disease-gene associations is important for understanding molecule mechanisms
of diseases, finding diagnostic markers and therapeutic targets. Many computational …