Mammal madness: is the mammal tree of life not yet resolved?
NM Foley, MS Springer… - … Transactions of the …, 2016 - royalsocietypublishing.org
Most molecular phylogenetic studies place all placental mammals into four superordinal
groups, Laurasiatheria (eg dogs, bats, whales), Euarchontoglires (eg humans, rodents …
groups, Laurasiatheria (eg dogs, bats, whales), Euarchontoglires (eg humans, rodents …
Bayesian molecular dating: opening up the black box
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …
offering an unprecedented capacity for investigating the evolutionary past of all species …
TreeTime: Maximum-likelihood phylodynamic analysis
Mutations that accumulate in the genome of cells or viruses can be used to infer their
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their …
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their …
[HTML][HTML] So many genes, so little time: a practical approach to divergence-time estimation in the genomic era
Phylogenomic datasets have been successfully used to address questions involving
evolutionary relationships, patterns of genome structure, signatures of selection, and gene …
evolutionary relationships, patterns of genome structure, signatures of selection, and gene …
Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates
RelTime estimates divergence times by relaxing the assumption of a strict molecular clock in
a phylogeny. It shows excellent performance in estimating divergence times for both …
a phylogeny. It shows excellent performance in estimating divergence times for both …
An evolutionary epigenetic clock in plants
Molecular clocks are the basis for dating the divergence between lineages over
macroevolutionary timescales (~ 105 to 108 years). However, classical DNA-based clocks …
macroevolutionary timescales (~ 105 to 108 years). However, classical DNA-based clocks …
Scalable relaxed clock phylogenetic dating
Molecular clock models relate observed genetic diversity to calendar time, enabling
estimation of times of common ancestry. Many large datasets of fast-evolving viruses are not …
estimation of times of common ancestry. Many large datasets of fast-evolving viruses are not …
Symbiosis in eukaryotic evolution
Abstract Fifty years ago, Lynn Margulis, inspiring in early twentieth-century ideas that put
forward a symbiotic origin for some eukaryotic organelles, proposed a unified theory for the …
forward a symbiotic origin for some eukaryotic organelles, proposed a unified theory for the …
Estimating timetrees with MEGA and the TimeTree resource
B Mello - Molecular biology and evolution, 2018 - academic.oup.com
The main outcome of molecular dating, the timetree, provides crucial information for
understanding the evolutionary history of lineages and is a requirement of several …
understanding the evolutionary history of lineages and is a requirement of several …
Divergence-time estimates for hominins provide insight into encephalization and body mass trends in human evolution
Quantifying speciation times during human evolution is fundamental as it provides a
timescale to test for the correlation between key evolutionary transitions and extrinsic factors …
timescale to test for the correlation between key evolutionary transitions and extrinsic factors …