T-cell epitope vaccine design by immunoinformatics
A Patronov, I Doytchinova - Open biology, 2013 - royalsocietypublishing.org
Vaccination is generally considered to be the most effective method of preventing infectious
diseases. All vaccinations work by presenting a foreign antigen to the immune system in …
diseases. All vaccinations work by presenting a foreign antigen to the immune system in …
An introduction to epitope prediction methods and software
X Yang, X Yu - Reviews in medical virology, 2009 - Wiley Online Library
In this paper, current prediction methods and algorithms for both T‐and B cell epitopes are
reviewed, and a comprehensive summary of epitope prediction software and databases …
reviewed, and a comprehensive summary of epitope prediction software and databases …
Structure based prediction of neoantigen immunogenicity
TP Riley, GLJ Keller, AR Smith, LM Davancaze… - Frontiers in …, 2019 - frontiersin.org
The development of immunological therapies that incorporate peptide antigens presented to
T cells by MHC proteins is a long sought-after goal, particularly for cancer, where mutated …
T cells by MHC proteins is a long sought-after goal, particularly for cancer, where mutated …
[HTML][HTML] Two complementary methods for predicting peptides binding major histocompatibility complex molecules
Peptides that bind to major histocompatibility complex products (MHC) are known to exhibit
certain sequence motifs which, though common, are neither necessary nor sufficient for …
certain sequence motifs which, though common, are neither necessary nor sufficient for …
Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins
D Rognan, SL Lauemøller, A Holm… - Journal of medicinal …, 1999 - ACS Publications
A simple and fast free energy scoring function (Fresno) has been developed to predict the
binding free energy of peptides to class I major histocompatibility (MHC) proteins. It differs …
binding free energy of peptides to class I major histocompatibility (MHC) proteins. It differs …
Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes
Understanding the mechanisms involved in the activation of an immune response is
essential to many fields in human health, including vaccine development and personalized …
essential to many fields in human health, including vaccine development and personalized …
Toward the quantitative prediction of T-cell epitopes: coMFA and coMSIA studies of peptides with affinity for the class I MHC molecule HLA-A* 0201
IA Doytchinova, DR Flower - Journal of medicinal chemistry, 2001 - ACS Publications
A set of 102 peptides with affinity for the class I MHC HLA-A* 0201 molecule was subjected
to three-dimensional quantitative structure− affinity relationship (3D QSAR) studies using …
to three-dimensional quantitative structure− affinity relationship (3D QSAR) studies using …
Methods and protocols for prediction of immunogenic epitopes
JC Tong, TW Tan, S Ranganathan - Briefings in Bioinformatics, 2007 - academic.oup.com
T-cell recognition of peptide/major histocompatibility complex (MHC) is a prerequisite for
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …
cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the …
General prediction of peptide-MHC binding modes using incremental docking: a proof of concept
The class I major histocompatibility complex (MHC) is capable of binding peptides derived
from intracellular proteins and displaying them at the cell surface. The recognition of these …
from intracellular proteins and displaying them at the cell surface. The recognition of these …
JenPep: a novel computational information resource for immunobiology and vaccinology
H McSparron, MJ Blythe, C Zygouri… - Journal of chemical …, 2003 - ACS Publications
JenPep is a relational database containing a compendium of thermodynamic binding data
for the interaction of peptides with a range of important immunological molecules: the major …
for the interaction of peptides with a range of important immunological molecules: the major …