Predicting virus emergence amid evolutionary noise

JL Geoghegan, EC Holmes - Open biology, 2017 - royalsocietypublishing.org
The study of virus disease emergence, whether it can be predicted and how it might be
prevented, has become a major research topic in biomedicine. Here we show that efforts to …

HIV genome-wide protein associations: a review of 30 years of research

G Li, E De Clercq - Microbiology and Molecular Biology Reviews, 2016 - Am Soc Microbiol
The HIV genome encodes a small number of viral proteins (ie, 16), invariably establishing
cooperative associations among HIV proteins and between HIV and host proteins, to invade …

Origin of the HIV-1 group O epidemic in western lowland gorillas

M D'arc, A Ayouba, A Esteban… - Proceedings of the …, 2015 - National Acad Sciences
HIV-1, the cause of AIDS, is composed of four phylogenetic lineages, groups M, N, O, and P,
each of which resulted from an independent cross-species transmission event of simian …

Resistance to type 1 interferons is a major determinant of HIV-1 transmission fitness

SS Iyer, F Bibollet-Ruche… - Proceedings of the …, 2017 - National Acad Sciences
Sexual transmission of HIV-1 is an inefficient process, with only one or few variants of the
donor quasispecies establishing the new infection. A critical, and as yet unresolved …

[PDF][PDF] Key viral adaptations preceding the AIDS pandemic

D Sauter, F Kirchhoff - Cell host & microbe, 2019 - cell.com
HIV, the causative agent of AIDS, has a complex evolutionary history involving several cross-
species transmissions and recombination events as well as changes in the repertoire and …

Small but Highly Versatile: The Viral Accessory Protein Vpu

M Volcic, L Wiesmüller, F Kirchhoff - Annual Review of Virology, 2023 - annualreviews.org
Human and simian immunodeficiency viruses (HIVs and SIVs, respectively) encode several
small proteins (Vif, Vpr, Nef, Vpu, and Vpx) that are called accessory because they are not …

[PDF][PDF] The potency of Nef-mediated SERINC5 antagonism correlates with the prevalence of primate lentiviruses in the wild

A Heigele, D Kmiec, K Regensburger, S Langer… - Cell host & …, 2016 - cell.com
The cellular factor serine incorporator 5 (SERINC5) impairs HIV-1 infectivity but is
antagonized by the viral Nef protein. We analyzed the anti-SERINC5 activity of Nef proteins …

[PDF][PDF] Differential regulation of NF-κB-mediated proviral and antiviral host gene expression by primate lentiviral Nef and Vpu proteins

D Sauter, D Hotter, B Van Driessche, CM Stürzel… - Cell reports, 2015 - cell.com
NF-κB is essential for effective transcription of primate lentiviral genomes and also activates
antiviral host genes. Here, we show that the early protein Nef of most primate lentiviruses …

How HIV Nef proteins hijack membrane traffic to promote infection

CZ Buffalo, Y Iwamoto, JH Hurley, X Ren - Journal of virology, 2019 - Am Soc Microbiol
The accessory protein Nef of human immunodeficiency virus (HIV) is a primary determinant
of viral pathogenesis. Nef is abundantly expressed during infection and reroutes a variety of …

[HTML][HTML] Vpu protein: The viroporin encoded by HIV-1

ME González - Viruses, 2015 - mdpi.com
Viral protein U (Vpu) is a lentiviral viroporin encoded by human immunodeficiency virus type
1 (HIV-1) and some simian immunodeficiency virus (SIV) strains. This small protein of 81 …