Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

Nonsense‐mediated mRNA decay: the challenge of telling right from wrong in a complex transcriptome

A Kishor, SE Fritz, JR Hogg - Wiley Interdisciplinary Reviews …, 2019 - Wiley Online Library
The nonsense‐mediated mRNA decay pathway selects and degrades its targets using a
dense network of RNA‐protein and protein–protein interactions. Together, these interactions …

Transcriptome and translatome co-evolution in mammals

ZY Wang, E Leushkin, A Liechti, S Ovchinnikova… - Nature, 2020 - nature.com
Gene-expression programs define shared and species-specific phenotypes, but their
evolution remains largely uncharacterized beyond the transcriptome layer. Here we report …

The missing link between genetic association and regulatory function

NJ Connally, S Nazeen, D Lee, H Shi… - Elife, 2022 - elifesciences.org
The genetic basis of most traits is highly polygenic and dominated by non-coding alleles. It is
widely assumed that such alleles exert small regulatory effects on the expression of cis …

Towards better understanding of KSHV life cycle: from transcription and posttranscriptional regulations to pathogenesis

L Yan, V Majerciak, ZM Zheng, K Lan - Virologica Sinica, 2019 - Springer
Kaposi's sarcoma-associated herpesvirus (KSHV), also known as human herpesvirus-8
(HHV-8), is etiologically linked to the development of Kaposi's sarcoma, primary effusion …

Writing a wrong: coupled RNA polymerase II transcription and RNA quality control

SA Peck, KD Hughes, JF Victorino… - Wiley Interdisciplinary …, 2019 - Wiley Online Library
Processing and maturation of precursor RNA species is coupled to RNA polymerase II
transcription. Co‐transcriptional RNA processing helps to ensure efficient and proper …

Not1 and Not4 inversely determine mRNA solubility that sets the dynamics of co-translational events

G Allen, B Weiss, OO Panasenko, S Huch, Z Villanyi… - Genome biology, 2023 - Springer
Abstract Background The Ccr4-Not complex is mostly known as the major eukaryotic
deadenylase. However, several studies have uncovered roles of the complex, in particular of …

[HTML][HTML] Post-transcriptional and epigenetic regulation of estrogen signaling

A Cignarella, C Boscaro, M Albiero, C Bolego… - … of Pharmacology and …, 2023 - ASPET
Post-translational and epigenetic regulation are important mechanisms controlling functions
of genes and proteins. Although the “classic” estrogen receptors (ERs) have been …

The formation of HuR/YB1 complex is required for the stabilization of target mRNA to promote myogenesis

BJ Sánchez, S Mubaid, S Busque… - Nucleic Acids …, 2023 - academic.oup.com
Abstract mRNA stability is the mechanism by which cells protect transcripts allowing their
expression to execute various functions that affect cell metabolism and fate. It is well …

The Genome-Wide Characterization of Alternative Splicing and RNA Editing in the Development of Coprinopsis cinerea

Y Xie, PL Chan, HS Kwan, J Chang - Journal of Fungi, 2023 - mdpi.com
Coprinopsis cinerea is one of the model species used in fungal developmental studies. This
mushroom-forming Basidiomycetes fungus has several developmental destinies in …