A brief history of protein sorting prediction

H Nielsen, KD Tsirigos, S Brunak, G von Heijne - The protein journal, 2019 - Springer
Ever since the signal hypothesis was proposed in 1971, the exact nature of signal peptides
has been a focus point of research. The prediction of signal peptides and protein subcellular …

[HTML][HTML] Remote control of gene function by local translation

H Jung, CG Gkogkas, N Sonenberg, CE Holt - Cell, 2014 - cell.com
The subcellular position of a protein is a key determinant of its function. Mounting evidence
indicates that RNA localization, where specific mRNAs are transported subcellularly and …

DeepLoc: prediction of protein subcellular localization using deep learning

JJ Almagro Armenteros, CK Sønderby… - …, 2017 - academic.oup.com
Motivation The prediction of eukaryotic protein subcellular localization is a well-studied topic
in bioinformatics due to its relevance in proteomics research. Many machine learning …

BUSCA: an integrative web server to predict subcellular localization of proteins

C Savojardo, PL Martelli, P Fariselli… - Nucleic acids …, 2018 - academic.oup.com
Here, we present BUSCA (http://busca. biocomp. unibo. it), a novel web server that
integrates different computational tools for predicting protein subcellular localization …

[HTML][HTML] COMPARTMENTS: unification and visualization of protein subcellular localization evidence

JX Binder, S Pletscher-Frankild, K Tsafou, C Stolte… - Database, 2014 - academic.oup.com
Information on protein subcellular localization is important to understand the cellular
functions of proteins. Currently, such information is manually curated from the literature …

LocTree3 prediction of localization

T Goldberg, M Hecht, T Hamp, T Karl… - Nucleic acids …, 2014 - academic.oup.com
The prediction of protein sub-cellular localization is an important step toward elucidating
protein function. For each query protein sequence, LocTree2 applies machine learning …

PredAlgo: a new subcellular localization prediction tool dedicated to green algae

M Tardif, A Atteia, M Specht, G Cogne… - Molecular biology …, 2012 - academic.oup.com
The unicellular green alga Chlamydomonas reinhardtii is a prime model for deciphering
processes occurring in the intracellular compartments of the photosynthetic cell. Organelle …

A new lens for RNA localization: liquid-liquid phase separation

EM Langdon, AS Gladfelter - Annual Review of Microbiology, 2018 - annualreviews.org
RNA localization mechanisms have been intensively studied and include localized
protection of mRNA from degradation, diffusion-coupled local entrapment of mRNA, and …

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

CM Hooper, SK Tanz, IR Castleden, MA Vacher… - …, 2014 - academic.oup.com
Motivation: Knowing the subcellular location of proteins is critical for understanding their
function and developing accurate networks representing eukaryotic biological processes …

Plant cell wall proteomics: the leadership of Arabidopsis thaliana

C Albenne, H Canut, E Jamet - Frontiers in plant science, 2013 - frontiersin.org
Plant cell wall proteins (CWPs) progressively emerged as crucial components of cell walls
although present in minor amounts. Cell wall polysaccharides such as pectins …