A brief history of protein sorting prediction
Ever since the signal hypothesis was proposed in 1971, the exact nature of signal peptides
has been a focus point of research. The prediction of signal peptides and protein subcellular …
has been a focus point of research. The prediction of signal peptides and protein subcellular …
[HTML][HTML] Remote control of gene function by local translation
The subcellular position of a protein is a key determinant of its function. Mounting evidence
indicates that RNA localization, where specific mRNAs are transported subcellularly and …
indicates that RNA localization, where specific mRNAs are transported subcellularly and …
DeepLoc: prediction of protein subcellular localization using deep learning
JJ Almagro Armenteros, CK Sønderby… - …, 2017 - academic.oup.com
Motivation The prediction of eukaryotic protein subcellular localization is a well-studied topic
in bioinformatics due to its relevance in proteomics research. Many machine learning …
in bioinformatics due to its relevance in proteomics research. Many machine learning …
BUSCA: an integrative web server to predict subcellular localization of proteins
Here, we present BUSCA (http://busca. biocomp. unibo. it), a novel web server that
integrates different computational tools for predicting protein subcellular localization …
integrates different computational tools for predicting protein subcellular localization …
[HTML][HTML] COMPARTMENTS: unification and visualization of protein subcellular localization evidence
Information on protein subcellular localization is important to understand the cellular
functions of proteins. Currently, such information is manually curated from the literature …
functions of proteins. Currently, such information is manually curated from the literature …
LocTree3 prediction of localization
T Goldberg, M Hecht, T Hamp, T Karl… - Nucleic acids …, 2014 - academic.oup.com
The prediction of protein sub-cellular localization is an important step toward elucidating
protein function. For each query protein sequence, LocTree2 applies machine learning …
protein function. For each query protein sequence, LocTree2 applies machine learning …
PredAlgo: a new subcellular localization prediction tool dedicated to green algae
The unicellular green alga Chlamydomonas reinhardtii is a prime model for deciphering
processes occurring in the intracellular compartments of the photosynthetic cell. Organelle …
processes occurring in the intracellular compartments of the photosynthetic cell. Organelle …
A new lens for RNA localization: liquid-liquid phase separation
EM Langdon, AS Gladfelter - Annual Review of Microbiology, 2018 - annualreviews.org
RNA localization mechanisms have been intensively studied and include localized
protection of mRNA from degradation, diffusion-coupled local entrapment of mRNA, and …
protection of mRNA from degradation, diffusion-coupled local entrapment of mRNA, and …
SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome
Motivation: Knowing the subcellular location of proteins is critical for understanding their
function and developing accurate networks representing eukaryotic biological processes …
function and developing accurate networks representing eukaryotic biological processes …
Plant cell wall proteomics: the leadership of Arabidopsis thaliana
C Albenne, H Canut, E Jamet - Frontiers in plant science, 2013 - frontiersin.org
Plant cell wall proteins (CWPs) progressively emerged as crucial components of cell walls
although present in minor amounts. Cell wall polysaccharides such as pectins …
although present in minor amounts. Cell wall polysaccharides such as pectins …