[HTML][HTML] CombFold: predicting structures of large protein assemblies using a combinatorial assembly algorithm and AlphaFold2
B Shor, D Schneidman-Duhovny - Nature methods, 2024 - nature.com
Deep learning models, such as AlphaFold2 and RosettaFold, enable high-accuracy protein
structure prediction. However, large protein complexes are still challenging to predict due to …
structure prediction. However, large protein complexes are still challenging to predict due to …
DeepUMQA3: a web server for accurate assessment of interface residue accuracy in protein complexes
J Liu, D Liu, GJ Zhang - Bioinformatics, 2023 - academic.oup.com
Motivation Model quality assessment is a crucial part of protein structure prediction and a
gateway to proper usage of models in biomedical applications. Many methods have been …
gateway to proper usage of models in biomedical applications. Many methods have been …
Estimating protein complex model accuracy based on ultrafast shape recognition and deep learning in CASP15
J Liu, D Liu, G He, G Zhang - Proteins: Structure, Function, and …, 2023 - Wiley Online Library
This article reports and analyzes the results of protein complex model accuracy estimation
by our methods (DeepUMQA3 and GraphGPSM) in the 15th Critical Assessment of …
by our methods (DeepUMQA3 and GraphGPSM) in the 15th Critical Assessment of …
[HTML][HTML] Recent advances and challenges in protein complex model accuracy estimation
F Liang, M Sun, L Xie, X Zhao, D Liu, K Zhao… - Computational and …, 2024 - Elsevier
Estimation of model accuracy plays a crucial role in protein structure prediction, aiming to
evaluate the quality of predicted protein structure models accurately and objectively. This …
evaluate the quality of predicted protein structure models accurately and objectively. This …
[HTML][HTML] A Survey of Deep Learning Methods for Estimating the Accuracy of Protein Quaternary Structure Models
The quality prediction of quaternary structure models of a protein complex, in the absence of
its true structure, is known as the Estimation of Model Accuracy (EMA). EMA is useful for …
its true structure, is known as the Estimation of Model Accuracy (EMA). EMA is useful for …