The ecology of hybrid incompatibilities

KA Thompson, Y Brandvain… - Cold Spring …, 2023 - cshperspectives.cshlp.org
Ecologically mediated selection against hybrids, caused by hybrid phenotypes fitting poorly
into available niches, is typically viewed as distinct from selection caused by epistatic …

Learning epistasis and residue coevolution patterns: Current trends and future perspectives for advancing enzyme engineering

M Wittmund, F Cadet, MD Davari - ACS catalysis, 2022 - ACS Publications
Engineering proteins and enzymes with the desired functionality has broad applications in
molecular biology, biotechnology, biomedical sciences, health, and medicine. The vastness …

Environmental modulation of global epistasis in a drug resistance fitness landscape

J Diaz-Colunga, A Sanchez… - Nature Communications, 2023 - nature.com
Interactions between mutations (epistasis) can add substantial complexity to genotype-
phenotype maps, hampering our ability to predict evolution. Yet, recent studies have shown …

Dominance and multi-locus interaction

J Li, C Bank - Trends in Genetics, 2024 - cell.com
Dominance is usually considered a constant value that describes the relative difference in
fitness or phenotype between heterozygotes and the average of homozygotes at a focal …

A rugged yet easily navigable fitness landscape

A Papkou, L Garcia-Pastor, JA Escudero, A Wagner - Science, 2023 - science.org
Fitness landscape theory predicts that rugged landscapes with multiple peaks impair
Darwinian evolution, but experimental evidence is limited. In this study, we used genome …

Unpredictability of the Fitness Effects of Antimicrobial Resistance Mutations Across Environments in Escherichia coli

A Hinz, A Amado, R Kassen, C Bank… - Molecular Biology and …, 2024 - academic.oup.com
The evolution of antimicrobial resistance (AMR) in bacteria is a major public health concern,
and antibiotic restriction is often implemented to reduce the spread of resistance. These …

Transient eco-evolutionary dynamics early in a phage epidemic have strong and lasting impact on the long-term evolution of bacterial defences

BNJ Watson, E Pursey, S Gandon, ER Westra - Plos Biology, 2023 - journals.plos.org
Organisms have evolved a range of constitutive (always active) and inducible (elicited by
parasites) defence mechanisms, but we have limited understanding of what drives the …

Mutations that enhance evolvability may open doors to faster adaptation

CB Ogbunugafor - nature communications, 2023 - nature.com
Mutations that enhance evolvability may open doors to faster adaptation | Nature
Communications Skip to main content Thank you for visiting nature.com. You are using a browser …

Global epistasis and the emergence of function in microbial consortia

J Diaz-Colunga, A Skwara, JCC Vila, D Bajic… - Cell, 2024 - cell.com
The many functions of microbial communities emerge from a complex web of interactions
between organisms and their environment. This poses a significant obstacle to engineering …

Epistasis decreases with increasing antibiotic pressure but not temperature

AH Ghenu, A Amado, I Gordo… - … Transactions of the …, 2023 - royalsocietypublishing.org
Predicting mutational effects is essential for the control of antibiotic resistance (ABR).
Predictions are difficult when there are strong genotype-by-environment (G× E), gene-by …