Advances and opportunities in single-cell transcriptomics for plant research

C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …

Plant single-cell solutions for energy and the environment

B Cole, D Bergmann, CE Blaby-Haas, IK Blaby… - Communications …, 2021 - nature.com
Progress in sequencing, microfluidics, and analysis strategies has revolutionized the
granularity at which multicellular organisms can be studied. In particular, single-cell …

Omics-guided metabolic pathway discovery in plants: Resources, approaches, and opportunities

K Zhao, SY Rhee - Current Opinion in Plant Biology, 2022 - Elsevier
Plants produce a vast array of metabolites, the biosynthetic routes of which remain largely
undetermined. Genome-scale enzyme and pathway annotations and omics technologies …

Plant cell identity in the era of single-cell transcriptomics

KH Ryu, Y Zhu, J Schiefelbein - Annual Review of Genetics, 2021 - annualreviews.org
High-throughput single-cell transcriptomic approaches have revolutionized our view of gene
expression at the level of individual cells, providing new insights into their heterogeneity …

Single-cell RNA sequencing for plant research: insights and possible benefits

G Bawa, Z Liu, X Yu, A Qin, X Sun - International Journal of Molecular …, 2022 - mdpi.com
In recent years, advances in single-cell RNA sequencing (scRNA-seq) technologies have
continued to change our views on biological systems by increasing the spatiotemporal …

Single-cell transcriptomics is revolutionizing the improvement of plant biotechnology research: recent advances and future opportunities

H Kaur, P Jha, SJ Ochatt, V Kumar - Critical Reviews in …, 2024 - Taylor & Francis
Single-cell approaches are a promising way to obtain high-resolution transcriptomics data
and have the potential to revolutionize the study of plant growth and development. Recent …

Comparative phylogenomics and phylotranscriptomics provide insights into the genetic complexity of nitrogen-fixing root-nodule symbiosis

Y Zhang, Y Fu, W Xian, X Li, Y Feng, F Bu, Y Shi… - Plant …, 2024 - cell.com
Plant root-nodule symbiosis (RNS) with mutualistic nitrogen-fixing bacteria is restricted to a
single clade of angiosperms, the Nitrogen-Fixing Nodulation Clade (NFNC), and is best …

The evolving definition of plant cell type

S Amini, JJ Doyle, M Libault - Frontiers in Plant Science, 2023 - frontiersin.org
In 1665 Robert Hooke, looking at cork through his microscope, discovered that plants are
composed of elementary structures he named “cells”. Variation in the expression of a single …

[PDF][PDF] Plant single-cell multiomics: cracking the molecular profiles of plant cells

S Thibivilliers, M Libault - Trends in Plant Science, 2021 - Elsevier
Single-cell-omics technologies help to reveal the differential use of the genomic information
of different cell types composing plant species, during cell differentiation, and in response to …

Cell types as species: Exploring a metaphor

JJ Doyle - Frontiers in Plant Science, 2022 - frontiersin.org
The concept of “cell type,” though fundamental to cell biology, is controversial. Cells have
historically been classified into types based on morphology, physiology, or location. More …