Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

Phylogeography's past, present, and future: 10 years after

MJ Hickerson, BC Carstens, J Cavender-Bares… - Molecular phylogenetics …, 2010 - Elsevier
Approximately 20 years ago, Avise and colleagues proposed the integration of
phylogenetics and population genetics for investigating the connection between micro-and …

A general species delimitation method with applications to phylogenetic placements

J Zhang, P Kapli, P Pavlidis, A Stamatakis - Bioinformatics, 2013 - academic.oup.com
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

T Fujisawa, TG Barraclough - Systematic biology, 2013 - academic.oup.com
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

N Puillandre, A Lambert, S Brouillet… - Molecular ecology, 2012 - Wiley Online Library
Within uncharacterized groups, DNA barcodes, short DNA sequences that are present in a
wide range of species, can be used to assign organisms into species. We propose an …

[图书][B] Species concepts in biology

FE Zachos - 2016 - Springer
The species problem has triggered the publication of an almost infinite number of theoretical
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …

Species concepts and species delimitation

K De Queiroz - Systematic biology, 2007 - academic.oup.com
The issue of species delimitation has long been confused with that of species
conceptualization, leading to a half century of controversy concerning both the definition of …

Sequence-based species delimitation for the DNA taxonomy of undescribed insects

J Pons, TG Barraclough, J Gomez-Zurita… - Systematic …, 2006 - academic.oup.com
Cataloging the very large number of undescribed species of insects could be greatly
accelerated by automated DNA based approaches, but procedures for large-scale species …

Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding

SDJ Brown, RA Collins, S Boyer… - Molecular ecology …, 2012 - Wiley Online Library
Abstract Spider: SPecies IDentity and Evolution in R is a new R package implementing a
number of useful analyses for DNA barcoding studies and associated research into species …

Towards integrative taxonomy

B Dayrat - Biological journal of the Linnean society, 2005 - academic.oup.com
Delineating species boundaries correctly is crucial to the discovery of life's diversity because
it determines whether or not different individual organisms are members of the same entity …