Cryptic species as a window into the paradigm shift of the species concept
C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …
delimitation of species affects many research fields. Many biologists now are embracing a …
Phylogeography's past, present, and future: 10 years after
Approximately 20 years ago, Avise and colleagues proposed the integration of
phylogenetics and population genetics for investigating the connection between micro-and …
phylogenetics and population genetics for investigating the connection between micro-and …
A general species delimitation method with applications to phylogenetic placements
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …
microbial community surveys and DNA metabarcoding studies. Current approaches either …
Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets
T Fujisawa, TG Barraclough - Systematic biology, 2013 - academic.oup.com
DNA barcoding-type studies assemble single-locus data from large samples of individuals
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …
and species, and have provided new kinds of data for evolutionary surveys of diversity. An …
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
N Puillandre, A Lambert, S Brouillet… - Molecular ecology, 2012 - Wiley Online Library
Within uncharacterized groups, DNA barcodes, short DNA sequences that are present in a
wide range of species, can be used to assign organisms into species. We propose an …
wide range of species, can be used to assign organisms into species. We propose an …
[图书][B] Species concepts in biology
FE Zachos - 2016 - Springer
The species problem has triggered the publication of an almost infinite number of theoretical
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …
Species concepts and species delimitation
K De Queiroz - Systematic biology, 2007 - academic.oup.com
The issue of species delimitation has long been confused with that of species
conceptualization, leading to a half century of controversy concerning both the definition of …
conceptualization, leading to a half century of controversy concerning both the definition of …
Sequence-based species delimitation for the DNA taxonomy of undescribed insects
Cataloging the very large number of undescribed species of insects could be greatly
accelerated by automated DNA based approaches, but procedures for large-scale species …
accelerated by automated DNA based approaches, but procedures for large-scale species …
Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
Abstract Spider: SPecies IDentity and Evolution in R is a new R package implementing a
number of useful analyses for DNA barcoding studies and associated research into species …
number of useful analyses for DNA barcoding studies and associated research into species …
Towards integrative taxonomy
B Dayrat - Biological journal of the Linnean society, 2005 - academic.oup.com
Delineating species boundaries correctly is crucial to the discovery of life's diversity because
it determines whether or not different individual organisms are members of the same entity …
it determines whether or not different individual organisms are members of the same entity …