[HTML][HTML] The impact of immunopeptidomics: From basic research to clinical implementation

IE Shapiro, M Bassani-Sternberg - Seminars in Immunology, 2023 - Elsevier
The immunopeptidome is the set of peptides presented by the major histocompatibility
complex (MHC) molecules, in humans also known as the human leukocyte antigen (HLA) …

Biochemical and functional characterization of mutant KRAS epitopes validates this oncoprotein for immunological targeting

AS Bear, T Blanchard, J Cesare, MJ Ford… - Nature …, 2021 - nature.com
Activating RAS missense mutations are among the most prevalent genomic alterations
observed in human cancers and drive oncogenesis in the three most lethal tumor types …

Molecular mimicry and autoimmunity in the time of COVID-19

M Rojas, M Herrán, C Ramírez-Santana… - Journal of …, 2023 - Elsevier
Infectious diseases are commonly implicated as potential initiators of autoimmune diseases
(ADs) and represent the most commonly known factor in the development of autoimmunity in …

Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues

JG Abelin, EJ Bergstrom, KD Rivera, HB Taylor… - Nature …, 2023 - nature.com
Serial multi-omic analysis of proteome, phosphoproteome, and acetylome provides insights
into changes in protein expression, cell signaling, cross-talk and epigenetic pathways …

Atypical acute myeloid leukemia-specific transcripts generate shared and immunogenic MHC class-I-associated epitopes

G Ehx, JD Larouche, C Durette, JP Laverdure… - Immunity, 2021 - cell.com
Acute myeloid leukemia (AML) has not benefited from innovative immunotherapies, mainly
because of the lack of actionable immune targets. Using an original proteogenomic …

The screening, identification, design and clinical application of tumor-specific neoantigens for TCR-T cells

J Li, Z Xiao, D Wang, L Jia, S Nie, X Zeng, W Hu - Molecular Cancer, 2023 - Springer
Recent advances in neoantigen research have accelerated the development of tumor
immunotherapies, including adoptive cell therapies (ACTs), cancer vaccines and antibody …

Peptide-based vaccine for cancer therapies

L Buonaguro, M Tagliamonte - Frontiers in Immunology, 2023 - frontiersin.org
Different strategies based on peptides are available for cancer treatment, in particular to
counter-act the progression of tumor growth and disease relapse. In the last decade, in the …

Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF

C Adams, W Gabriel, K Laukens, M Picciani… - Nature …, 2024 - nature.com
Immunopeptidomics is crucial for immunotherapy and vaccine development. Because the
generation of immunopeptides from their parent proteins does not adhere to clear-cut rules …

Genetic immune escape landscape in primary and metastatic cancer

F Martínez-Jiménez, P Priestley, C Shale, J Baber… - Nature Genetics, 2023 - nature.com
Studies have characterized the immune escape landscape across primary tumors. However,
whether late-stage metastatic tumors present differences in genetic immune escape (GIE) …

Designing neoantigen cancer vaccines, trials, and outcomes

N Biswas, S Chakrabarti, V Padul, LD Jones… - Frontiers in …, 2023 - frontiersin.org
Neoantigen vaccines are based on epitopes of antigenic parts of mutant proteins expressed
in cancer cells. These highly immunogenic antigens may trigger the immune system to …