Innate receptors with high specificity for HLA class I–peptide complexes

MJW Sim, P Brennan, KL Wahl, J Lu… - Science …, 2023 - science.org
Genetic studies associate killer cell immunoglobulin-like receptors (KIRs) and their HLA
class I ligands with a variety of human diseases. The basis for these associations and the …

Artificial intelligence in cancer immunotherapy: applications in neoantigen recognition, antibody design and immunotherapy response prediction

T Li, Y Li, X Zhu, Y He, Y Wu, T Ying, Z Xie - Seminars in Cancer Biology, 2023 - Elsevier
Cancer immunotherapy is a method of controlling and eliminating tumors by reactivating the
body's cancer-immunity cycle and restoring its antitumor immune response. The increased …

High-throughput, targeted MHC class I immunopeptidomics using a functional genetics screening platform

PM Bruno, RT Timms, NS Abdelfattah, Y Leng… - Nature …, 2023 - nature.com
Identification of CD8+ T cell epitopes is critical for the development of immunotherapeutics.
Existing methods for major histocompatibility complex class I (MHC class I) ligand discovery …

RNA dysregulation: an expanding source of cancer immunotherapy targets

Y Pan, KE Kadash-Edmondson, R Wang… - Trends in …, 2021 - cell.com
Cancer transcriptomes frequently exhibit RNA dysregulation. As the resulting aberrant
transcripts may be translated into cancer-specific proteins, there is growing interest in …

Current challenges in vaccinology

RB Kennedy, IG Ovsyannikova, P Palese… - Frontiers in …, 2020 - frontiersin.org
The development of vaccines, which prime the immune system to respond to future
infections, has led to global declines in morbidity and mortality from dreadful infectious …

The SysteMHC Atlas v2. 0, an updated resource for mass spectrometry-based immunopeptidomics

X Huang, Z Gan, H Cui, T Lan, Y Liu… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The SysteMHC Atlas v1. 0 was the first public repository dedicated to mass
spectrometry-based immunopeptidomics. Here we introduce a newly released version of the …

DeepRescore: leveraging deep learning to improve peptide identification in immunopeptidomics

K Li, A Jain, A Malovannaya, B Wen, B Zhang - Proteomics, 2020 - Wiley Online Library
The identification of major histocompatibility complex (MHC)‐binding peptides in mass
spectrometry (MS)‐based immunopeptideomics relies largely on database search engines …

mRNA-based therapeutics in cancer treatment

H Sun, Y Zhang, G Wang, W Yang, Y Xu - Pharmaceutics, 2023 - mdpi.com
Over the past two decades, significant technological innovations have led to messenger
RNA (mRNA) becoming a promising option for developing prophylactic and therapeutic …

Frontiers in cancer immunotherapy—a symposium report

J Cable, B Greenbaum, D Pe'er… - Annals of the New …, 2021 - Wiley Online Library
Cancer immunotherapy has dramatically changed the approach to cancer treatment. The
aim of targeting the immune system to recognize and destroy cancer cells has afforded …

[HTML][HTML] Contemplating immunopeptidomes to better predict them

D Gfeller, Y Liu, J Racle - Seminars in Immunology, 2023 - Elsevier
The identification of T-cell epitopes is key for a complete molecular understanding of
immune recognition mechanisms in infectious diseases, autoimmunity and cancer. T-cell …